Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
CHKB-CPT1BH3BT56 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 AC139530.1-201ENST00000575312 1977 ntBASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CHKB-CPT1BH3BT56 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 AC108673.1-201ENST00000510422 1159 ntBASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
CHKB-CPT1BH3BT56 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 STK24-203ENST00000397517 4578 ntTSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
CHKB-CPT1BH3BT56 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC11.58□□□□□ -0.56
CHKB-CPT1BH3BT56 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC11.58□□□□□ -0.56
CHKB-CPT1BH3BT56 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
CHKB-CPT1BH3BT56 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms