Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
TRAV40A0A0B4J280 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRAV40A0A0B4J280 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 SERPINH1P1-201ENST00000419794 1249 ntBASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 AC091799.1-201ENST00000422823 811 ntBASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 RNA5SP413-201ENST00000516373 109 ntBASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 MIR4651-201ENST00000582622 73 ntBASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV40A0A0B4J280 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 PKD1P6-201ENST00000343738 4769 ntBASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 TBCB-214ENST00000629269 413 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV40A0A0B4J280 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV40A0A0B4J280 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 FAM21FP-204ENST00000608637 956 ntBASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV40A0A0B4J280 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms