Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 KRT18P20-201ENST00000548986 1279 ntBASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 AC104187.1-201ENST00000607510 612 ntBASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS9D1Q9Y2B5 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 AP001160.3-201ENST00000601484 763 ntBASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS9D1Q9Y2B5 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 AC245052.3-201ENST00000450182 901 ntBASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 AC121338.2-201ENST00000622535 1744 ntBASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS9D1Q9Y2B5 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS9D1Q9Y2B5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS9D1Q9Y2B5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS9D1Q9Y2B5 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS9D1Q9Y2B5 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS9D1Q9Y2B5 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VPS9D1Q9Y2B5 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
VPS9D1Q9Y2B5 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.64■□□□□ 0.9
VPS9D1Q9Y2B5 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS9D1Q9Y2B5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS9D1Q9Y2B5 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 AC006128.1-201ENST00000624704 1661 ntBASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS9D1Q9Y2B5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 KRT19P1-201ENST00000405746 1186 ntBASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS9D1Q9Y2B5 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms