Protein–RNA interactions for Protein: Q9UQN3

CHMP2B, Charged multivesicular body protein 2b, humanhuman

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2BQ9UQN3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.19■□□□□ 0.98
CHMP2BQ9UQN3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2BQ9UQN3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2BQ9UQN3 TSPY26P-201ENST00000476365 1326 ntBASIC21.19■□□□□ 0.98
CHMP2BQ9UQN3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CHMP2BQ9UQN3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2BQ9UQN3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 AC005224.4-201ENST00000583262 1652 ntBASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CHMP2BQ9UQN3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 AP005212.1-201ENST00000581547 1997 ntBASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2BQ9UQN3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 AC121338.2-201ENST00000622535 1744 ntBASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 AC096631.2-201ENST00000436136 790 ntBASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP2BQ9UQN3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 AC027682.1-201ENST00000562846 899 ntBASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 GABARAPL3-202ENST00000624044 1851 ntBASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP2BQ9UQN3 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP2BQ9UQN3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP2BQ9UQN3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 PBX2P1-201ENST00000493219 1291 ntBASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP2BQ9UQN3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2BQ9UQN3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2BQ9UQN3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CHMP2BQ9UQN3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2BQ9UQN3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms