Protein–RNA interactions for Protein: Q9UHP3

USP25, Ubiquitin carboxyl-terminal hydrolase 25, humanhuman

Predictions only

Length 1,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP25Q9UHP3 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.82■■□□□ 1.4
USP25Q9UHP3 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC23.82■■□□□ 1.4
USP25Q9UHP3 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP25Q9UHP3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP25Q9UHP3 AFG3L1P-217ENST00000557444 2447 ntBASIC23.81■■□□□ 1.4
USP25Q9UHP3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP25Q9UHP3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.81■■□□□ 1.4
USP25Q9UHP3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
USP25Q9UHP3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
USP25Q9UHP3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC23.81■■□□□ 1.4
USP25Q9UHP3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP25Q9UHP3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.81■■□□□ 1.4
USP25Q9UHP3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP25Q9UHP3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP25Q9UHP3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.81■■□□□ 1.4
USP25Q9UHP3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.81■■□□□ 1.4
USP25Q9UHP3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP25Q9UHP3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC23.81■■□□□ 1.4
USP25Q9UHP3 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP25Q9UHP3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.8■■□□□ 1.4
USP25Q9UHP3 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP25Q9UHP3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP25Q9UHP3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP25Q9UHP3 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC23.8■■□□□ 1.4
USP25Q9UHP3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP25Q9UHP3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
USP25Q9UHP3 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.8■■□□□ 1.4
USP25Q9UHP3 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP25Q9UHP3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.8■■□□□ 1.4
USP25Q9UHP3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
USP25Q9UHP3 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP25Q9UHP3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP25Q9UHP3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP25Q9UHP3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.79■■□□□ 1.4
USP25Q9UHP3 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.79■■□□□ 1.4
USP25Q9UHP3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.79■■□□□ 1.4
USP25Q9UHP3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP25Q9UHP3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.79■■□□□ 1.4
USP25Q9UHP3 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.79■■□□□ 1.4
USP25Q9UHP3 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.79■■□□□ 1.4
USP25Q9UHP3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP25Q9UHP3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
USP25Q9UHP3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
USP25Q9UHP3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
USP25Q9UHP3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.78■■□□□ 1.4
USP25Q9UHP3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
USP25Q9UHP3 AP001330.3-201ENST00000520123 633 ntBASIC23.78■■□□□ 1.4
USP25Q9UHP3 AL355001.2-201ENST00000620617 1191 ntBASIC23.78■■□□□ 1.4
USP25Q9UHP3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC23.78■■□□□ 1.4
USP25Q9UHP3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP25Q9UHP3 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC23.77■■□□□ 1.4
USP25Q9UHP3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.77■■□□□ 1.4
USP25Q9UHP3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.77■■□□□ 1.4
USP25Q9UHP3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.77■■□□□ 1.4
USP25Q9UHP3 AC105233.4-201ENST00000642045 216 ntBASIC23.77■■□□□ 1.4
USP25Q9UHP3 AC073314.1-201ENST00000568729 2216 ntBASIC23.77■■□□□ 1.4
USP25Q9UHP3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 TSPY26P-201ENST00000476365 1326 ntBASIC23.77■■□□□ 1.4
USP25Q9UHP3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC23.77■■□□□ 1.4
USP25Q9UHP3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
USP25Q9UHP3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 RASA4CP-201ENST00000424092 1398 ntBASIC23.77■■□□□ 1.4
USP25Q9UHP3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 AC055733.4-201ENST00000638462 1354 ntBASIC23.77■■□□□ 1.4
USP25Q9UHP3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP25Q9UHP3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.39
USP25Q9UHP3 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC23.76■■□□□ 1.39
USP25Q9UHP3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP25Q9UHP3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP25Q9UHP3 AP005212.1-201ENST00000581547 1997 ntBASIC23.76■■□□□ 1.39
USP25Q9UHP3 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
USP25Q9UHP3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP25Q9UHP3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP25Q9UHP3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP25Q9UHP3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.76■■□□□ 1.39
USP25Q9UHP3 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP25Q9UHP3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.76■■□□□ 1.39
USP25Q9UHP3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms