Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
DDX56Q9NY93 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.7■■□□□ 1.06
DDX56Q9NY93 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
DDX56Q9NY93 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.69■■□□□ 1.06
DDX56Q9NY93 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.69■■□□□ 1.06
DDX56Q9NY93 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.69■■□□□ 1.06
DDX56Q9NY93 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
DDX56Q9NY93 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
DDX56Q9NY93 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.69■■□□□ 1.06
DDX56Q9NY93 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
DDX56Q9NY93 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
DDX56Q9NY93 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
DDX56Q9NY93 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.68■■□□□ 1.06
DDX56Q9NY93 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
DDX56Q9NY93 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
DDX56Q9NY93 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
DDX56Q9NY93 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
DDX56Q9NY93 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
DDX56Q9NY93 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
DDX56Q9NY93 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.68■■□□□ 1.06
DDX56Q9NY93 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.68■■□□□ 1.06
DDX56Q9NY93 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
DDX56Q9NY93 FEM1AP1-201ENST00000431297 1995 ntBASIC21.68■■□□□ 1.06
DDX56Q9NY93 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
DDX56Q9NY93 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
DDX56Q9NY93 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.68■■□□□ 1.06
DDX56Q9NY93 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
DDX56Q9NY93 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX56Q9NY93 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX56Q9NY93 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 MIR638-201ENST00000385237 100 ntBASIC21.67■■□□□ 1.06
DDX56Q9NY93 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 AL157384.1-201ENST00000445995 2473 ntBASIC21.67■■□□□ 1.06
DDX56Q9NY93 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.67■■□□□ 1.06
DDX56Q9NY93 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.66■■□□□ 1.06
DDX56Q9NY93 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.66■■□□□ 1.06
DDX56Q9NY93 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.66■■□□□ 1.06
DDX56Q9NY93 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.66■■□□□ 1.06
DDX56Q9NY93 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
DDX56Q9NY93 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX56Q9NY93 LINC02228-203ENST00000641970 1355 ntBASIC21.65■■□□□ 1.06
DDX56Q9NY93 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX56Q9NY93 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.65■■□□□ 1.06
DDX56Q9NY93 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX56Q9NY93 AC138907.5-202ENST00000569484 235 ntBASIC21.65■■□□□ 1.06
DDX56Q9NY93 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX56Q9NY93 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX56Q9NY93 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.64■■□□□ 1.06
DDX56Q9NY93 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX56Q9NY93 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX56Q9NY93 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
DDX56Q9NY93 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX56Q9NY93 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX56Q9NY93 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX56Q9NY93 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.64■■□□□ 1.05
DDX56Q9NY93 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX56Q9NY93 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX56Q9NY93 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX56Q9NY93 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.64■■□□□ 1.05
DDX56Q9NY93 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.64■■□□□ 1.05
DDX56Q9NY93 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX56Q9NY93 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX56Q9NY93 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX56Q9NY93 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
DDX56Q9NY93 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX56Q9NY93 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms