Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC26.18■■□□□ 1.78
USP44Q9H0E7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC26.18■■□□□ 1.78
USP44Q9H0E7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP44Q9H0E7 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
USP44Q9H0E7 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP44Q9H0E7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
USP44Q9H0E7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP44Q9H0E7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC26.17■■□□□ 1.78
USP44Q9H0E7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC26.17■■□□□ 1.78
USP44Q9H0E7 AC005181.1-201ENST00000604782 1256 ntBASIC26.17■■□□□ 1.78
USP44Q9H0E7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP44Q9H0E7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP44Q9H0E7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP44Q9H0E7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC26.17■■□□□ 1.78
USP44Q9H0E7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP44Q9H0E7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
USP44Q9H0E7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP44Q9H0E7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
USP44Q9H0E7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP44Q9H0E7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC26.17■■□□□ 1.78
USP44Q9H0E7 FEM1AP4-201ENST00000443167 1987 ntBASIC26.16■■□□□ 1.78
USP44Q9H0E7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USP44Q9H0E7 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP44Q9H0E7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 MIR663A-201ENST00000385250 93 ntBASIC26.16■■□□□ 1.78
USP44Q9H0E7 AC245052.3-201ENST00000450182 901 ntBASIC26.16■■□□□ 1.78
USP44Q9H0E7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USP44Q9H0E7 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP44Q9H0E7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP44Q9H0E7 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP44Q9H0E7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC26.15■■□□□ 1.78
USP44Q9H0E7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC26.15■■□□□ 1.78
USP44Q9H0E7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC26.15■■□□□ 1.78
USP44Q9H0E7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP44Q9H0E7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
USP44Q9H0E7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP44Q9H0E7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.14■■□□□ 1.78
USP44Q9H0E7 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC26.14■■□□□ 1.78
USP44Q9H0E7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
USP44Q9H0E7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC26.14■■□□□ 1.78
USP44Q9H0E7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP44Q9H0E7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.77
USP44Q9H0E7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC26.14■■□□□ 1.77
USP44Q9H0E7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP44Q9H0E7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP44Q9H0E7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP44Q9H0E7 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP44Q9H0E7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC26.13■■□□□ 1.77
USP44Q9H0E7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC26.13■■□□□ 1.77
USP44Q9H0E7 NCF1B-203ENST00000435988 1254 ntBASIC26.13■■□□□ 1.77
USP44Q9H0E7 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP44Q9H0E7 GXYLT1P5-201ENST00000614548 1189 ntBASIC26.13■■□□□ 1.77
USP44Q9H0E7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC26.13■■□□□ 1.77
USP44Q9H0E7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP44Q9H0E7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP44Q9H0E7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP44Q9H0E7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
USP44Q9H0E7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
USP44Q9H0E7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC26.12■■□□□ 1.77
USP44Q9H0E7 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC26.12■■□□□ 1.77
USP44Q9H0E7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC26.12■■□□□ 1.77
USP44Q9H0E7 AL591742.1-201ENST00000604433 565 ntBASIC26.12■■□□□ 1.77
USP44Q9H0E7 AC016405.3-201ENST00000607710 860 ntBASIC26.12■■□□□ 1.77
USP44Q9H0E7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC26.12■■□□□ 1.77
USP44Q9H0E7 AF106564.1-201ENST00000607058 2553 ntBASIC26.12■■□□□ 1.77
USP44Q9H0E7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
USP44Q9H0E7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP44Q9H0E7 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP44Q9H0E7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC26.11■■□□□ 1.77
USP44Q9H0E7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP44Q9H0E7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC26.11■■□□□ 1.77
USP44Q9H0E7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP44Q9H0E7 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP44Q9H0E7 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC26.11■■□□□ 1.77
USP44Q9H0E7 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC26.11■■□□□ 1.77
USP44Q9H0E7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP44Q9H0E7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC26.11■■□□□ 1.77
USP44Q9H0E7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP44Q9H0E7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC26.1■■□□□ 1.77
USP44Q9H0E7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP44Q9H0E7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC26.1■■□□□ 1.77
USP44Q9H0E7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC26.1■■□□□ 1.77
USP44Q9H0E7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP44Q9H0E7 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP44Q9H0E7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms