Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28AQ8IWP9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28AQ8IWP9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 AP000997.3-201ENST00000623333 2250 ntBASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28AQ8IWP9 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CCDC28AQ8IWP9 AC026202.3-201ENST00000600805 1127 ntBASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 AC133552.2-201ENST00000619106 1032 ntBASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 AC087742.1-201ENST00000575880 1738 ntBASIC17.33■□□□□ 0.36
CCDC28AQ8IWP9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms