Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.71■□□□□ 0.91
LRRK1Q38SD2 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 DUSP5P2-201ENST00000426873 1033 ntBASIC20.71■□□□□ 0.91
LRRK1Q38SD2 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 AC069236.1-201ENST00000604339 616 ntBASIC20.71■□□□□ 0.91
LRRK1Q38SD2 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRRK1Q38SD2 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 AL512625.2-201ENST00000417533 625 ntBASIC20.7■□□□□ 0.9
LRRK1Q38SD2 BX276092.2-201ENST00000417668 665 ntBASIC20.7■□□□□ 0.9
LRRK1Q38SD2 AC069152.1-201ENST00000438030 544 ntBASIC20.7■□□□□ 0.9
LRRK1Q38SD2 AC093787.1-201ENST00000450396 207 ntBASIC20.7■□□□□ 0.9
LRRK1Q38SD2 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.7■□□□□ 0.9
LRRK1Q38SD2 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LRRK1Q38SD2 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.69■□□□□ 0.9
LRRK1Q38SD2 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRRK1Q38SD2 LINC00565-201ENST00000562710 2331 ntBASIC20.68■□□□□ 0.9
LRRK1Q38SD2 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRRK1Q38SD2 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 AC073210.2-201ENST00000430369 194 ntBASIC20.66■□□□□ 0.9
LRRK1Q38SD2 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.66■□□□□ 0.9
LRRK1Q38SD2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 AC087633.2-202ENST00000565166 1439 ntBASIC20.65■□□□□ 0.9
LRRK1Q38SD2 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 AL591742.1-201ENST00000604433 565 ntBASIC20.65■□□□□ 0.9
LRRK1Q38SD2 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms