Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.34■□□□□ 0.69
RFX4Q33E94 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 AC010525.1-201ENST00000585559 441 ntBASIC19.34■□□□□ 0.69
RFX4Q33E94 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
RFX4Q33E94 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.34■□□□□ 0.69
RFX4Q33E94 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RFX4Q33E94 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFX4Q33E94 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFX4Q33E94 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFX4Q33E94 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RFX4Q33E94 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.33■□□□□ 0.68
RFX4Q33E94 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFX4Q33E94 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
RFX4Q33E94 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.33■□□□□ 0.68
RFX4Q33E94 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFX4Q33E94 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.33■□□□□ 0.68
RFX4Q33E94 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFX4Q33E94 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.33■□□□□ 0.68
RFX4Q33E94 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.33■□□□□ 0.68
RFX4Q33E94 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RFX4Q33E94 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
RFX4Q33E94 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.32■□□□□ 0.68
RFX4Q33E94 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.32■□□□□ 0.68
RFX4Q33E94 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RFX4Q33E94 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.32■□□□□ 0.68
RFX4Q33E94 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
RFX4Q33E94 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RFX4Q33E94 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.32■□□□□ 0.68
RFX4Q33E94 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.31■□□□□ 0.68
RFX4Q33E94 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 AC020907.5-201ENST00000624372 1936 ntBASIC19.31■□□□□ 0.68
RFX4Q33E94 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX4Q33E94 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.31■□□□□ 0.68
RFX4Q33E94 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX4Q33E94 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX4Q33E94 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RFX4Q33E94 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX4Q33E94 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 AL138724.1-201ENST00000606771 1088 ntBASIC19.31■□□□□ 0.68
RFX4Q33E94 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.31■□□□□ 0.68
RFX4Q33E94 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
RFX4Q33E94 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.31■□□□□ 0.68
RFX4Q33E94 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
RFX4Q33E94 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.31■□□□□ 0.68
RFX4Q33E94 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFX4Q33E94 AFG3L1P-217ENST00000557444 2447 ntBASIC19.31■□□□□ 0.68
RFX4Q33E94 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.31■□□□□ 0.68
RFX4Q33E94 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.3■□□□□ 0.68
RFX4Q33E94 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RFX4Q33E94 AC027702.1-201ENST00000563810 1770 ntBASIC19.3■□□□□ 0.68
RFX4Q33E94 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RFX4Q33E94 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.3■□□□□ 0.68
RFX4Q33E94 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RFX4Q33E94 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
RFX4Q33E94 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RFX4Q33E94 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RFX4Q33E94 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RFX4Q33E94 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RFX4Q33E94 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RFX4Q33E94 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFX4Q33E94 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RFX4Q33E94 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.29■□□□□ 0.68
RFX4Q33E94 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFX4Q33E94 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
RFX4Q33E94 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.29■□□□□ 0.68
RFX4Q33E94 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
RFX4Q33E94 SYT6-210ENST00000641643 1587 ntBASIC19.29■□□□□ 0.68
RFX4Q33E94 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFX4Q33E94 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX4Q33E94 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.29■□□□□ 0.68
RFX4Q33E94 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms