Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.34■□□□□ 0.69
RNF4P78317 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF4P78317 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF4P78317 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF4P78317 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.33■□□□□ 0.69
RNF4P78317 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF4P78317 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.33■□□□□ 0.69
RNF4P78317 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF4P78317 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF4P78317 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
RNF4P78317 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.33■□□□□ 0.68
RNF4P78317 CROCCP5-201ENST00000436658 830 ntBASIC19.33■□□□□ 0.68
RNF4P78317 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 Z98882.1-201ENST00000622160 2253 ntBASIC19.33■□□□□ 0.68
RNF4P78317 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
RNF4P78317 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF4P78317 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF4P78317 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF4P78317 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.32■□□□□ 0.68
RNF4P78317 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF4P78317 AC007322.4-201ENST00000509611 723 ntBASIC19.32■□□□□ 0.68
RNF4P78317 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
RNF4P78317 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF4P78317 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF4P78317 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF4P78317 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF4P78317 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.31■□□□□ 0.68
RNF4P78317 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RNF4P78317 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF4P78317 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF4P78317 MIR663A-201ENST00000385250 93 ntBASIC19.31■□□□□ 0.68
RNF4P78317 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF4P78317 AC006970.2-201ENST00000450065 779 ntBASIC19.31■□□□□ 0.68
RNF4P78317 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF4P78317 AC005181.1-201ENST00000604782 1256 ntBASIC19.31■□□□□ 0.68
RNF4P78317 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RNF4P78317 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF4P78317 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.31■□□□□ 0.68
RNF4P78317 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.31■□□□□ 0.68
RNF4P78317 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.31■□□□□ 0.68
RNF4P78317 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF4P78317 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF4P78317 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF4P78317 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.31■□□□□ 0.68
RNF4P78317 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.31■□□□□ 0.68
RNF4P78317 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
RNF4P78317 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
RNF4P78317 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF4P78317 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RNF4P78317 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
RNF4P78317 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF4P78317 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
RNF4P78317 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF4P78317 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF4P78317 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF4P78317 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF4P78317 AC068338.2-201ENST00000563278 1430 ntBASIC19.29■□□□□ 0.68
RNF4P78317 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF4P78317 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.29■□□□□ 0.68
RNF4P78317 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF4P78317 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
RNF4P78317 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
RNF4P78317 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF4P78317 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF4P78317 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF4P78317 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF4P78317 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF4P78317 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF4P78317 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.28■□□□□ 0.68
RNF4P78317 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF4P78317 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.28■□□□□ 0.68
RNF4P78317 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RNF4P78317 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF4P78317 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF4P78317 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RNF4P78317 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF4P78317 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
RNF4P78317 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF4P78317 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF4P78317 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF4P78317 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms