Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
RPL39P62891 TSPY9P-201ENST00000440215 945 ntBASIC14.72□□□□□ -0.05
RPL39P62891 TSPY11P-201ENST00000442607 1045 ntBASIC14.72□□□□□ -0.05
RPL39P62891 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RPL39P62891 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RPL39P62891 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC14.72□□□□□ -0.05
RPL39P62891 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
RPL39P62891 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
RPL39P62891 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RPL39P62891 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC14.72□□□□□ -0.05
RPL39P62891 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC14.72□□□□□ -0.05
RPL39P62891 AC087289.5-201ENST00000586076 3175 ntBASIC14.71□□□□□ -0.05
RPL39P62891 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
RPL39P62891 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC14.71□□□□□ -0.05
RPL39P62891 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC14.71□□□□□ -0.05
RPL39P62891 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC14.71□□□□□ -0.05
RPL39P62891 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC14.71□□□□□ -0.05
RPL39P62891 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC14.71□□□□□ -0.05
RPL39P62891 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
RPL39P62891 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
RPL39P62891 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RPL39P62891 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RPL39P62891 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RPL39P62891 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
RPL39P62891 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RPL39P62891 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
RPL39P62891 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RPL39P62891 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
RPL39P62891 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC14.7□□□□□ -0.06
RPL39P62891 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
RPL39P62891 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RPL39P62891 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RPL39P62891 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RPL39P62891 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC14.7□□□□□ -0.06
RPL39P62891 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RPL39P62891 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC14.7□□□□□ -0.06
RPL39P62891 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
RPL39P62891 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RPL39P62891 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RPL39P62891 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RPL39P62891 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC14.69□□□□□ -0.06
RPL39P62891 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
RPL39P62891 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC14.69□□□□□ -0.06
RPL39P62891 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC14.69□□□□□ -0.06
RPL39P62891 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC14.69□□□□□ -0.06
RPL39P62891 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC14.69□□□□□ -0.06
RPL39P62891 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
RPL39P62891 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC14.69□□□□□ -0.06
RPL39P62891 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
RPL39P62891 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RPL39P62891 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC14.69□□□□□ -0.06
RPL39P62891 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC14.69□□□□□ -0.06
RPL39P62891 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
RPL39P62891 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
RPL39P62891 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 AC020907.5-201ENST00000624372 1936 ntBASIC14.68□□□□□ -0.06
RPL39P62891 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC14.68□□□□□ -0.06
RPL39P62891 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 OR2I1P-207ENST00000453522 948 ntBASIC14.68□□□□□ -0.06
RPL39P62891 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC14.68□□□□□ -0.06
RPL39P62891 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
RPL39P62891 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
RPL39P62891 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC14.68□□□□□ -0.06
RPL39P62891 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC14.68□□□□□ -0.06
RPL39P62891 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
RPL39P62891 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
RPL39P62891 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
RPL39P62891 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
RPL39P62891 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RPL39P62891 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
RPL39P62891 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms