Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.8■□□□□ 0.76
LIM2P55344 AC145350.3-201ENST00000569033 163 ntBASIC19.8■□□□□ 0.76
LIM2P55344 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.8■□□□□ 0.76
LIM2P55344 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIM2P55344 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.8■□□□□ 0.76
LIM2P55344 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
LIM2P55344 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIM2P55344 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIM2P55344 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIM2P55344 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.79■□□□□ 0.76
LIM2P55344 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
LIM2P55344 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIM2P55344 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIM2P55344 KRT16P2-201ENST00000414673 1423 ntBASIC19.79■□□□□ 0.76
LIM2P55344 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIM2P55344 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIM2P55344 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIM2P55344 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.79■□□□□ 0.76
LIM2P55344 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.79■□□□□ 0.76
LIM2P55344 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.79■□□□□ 0.76
LIM2P55344 AC022517.1-201ENST00000592429 346 ntBASIC19.79■□□□□ 0.76
LIM2P55344 UBE2DNL-204ENST00000602536 740 ntBASIC19.79■□□□□ 0.76
LIM2P55344 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LIM2P55344 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.78■□□□□ 0.76
LIM2P55344 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIM2P55344 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.78■□□□□ 0.76
LIM2P55344 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIM2P55344 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIM2P55344 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.78■□□□□ 0.76
LIM2P55344 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LIM2P55344 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIM2P55344 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LIM2P55344 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIM2P55344 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIM2P55344 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIM2P55344 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.77■□□□□ 0.76
LIM2P55344 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.77■□□□□ 0.76
LIM2P55344 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.77■□□□□ 0.76
LIM2P55344 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.77■□□□□ 0.76
LIM2P55344 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIM2P55344 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.77■□□□□ 0.75
LIM2P55344 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
LIM2P55344 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
LIM2P55344 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIM2P55344 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.76■□□□□ 0.75
LIM2P55344 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.76■□□□□ 0.75
LIM2P55344 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.76■□□□□ 0.75
LIM2P55344 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.76■□□□□ 0.75
LIM2P55344 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.76■□□□□ 0.75
LIM2P55344 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIM2P55344 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.75■□□□□ 0.75
LIM2P55344 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LIM2P55344 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.75■□□□□ 0.75
LIM2P55344 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.75■□□□□ 0.75
LIM2P55344 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.75■□□□□ 0.75
LIM2P55344 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.75■□□□□ 0.75
LIM2P55344 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.75■□□□□ 0.75
LIM2P55344 AC016769.1-201ENST00000409132 1010 ntBASIC19.75■□□□□ 0.75
LIM2P55344 SLC7A5P1-201ENST00000568957 537 ntBASIC19.75■□□□□ 0.75
LIM2P55344 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.75■□□□□ 0.75
LIM2P55344 MYCNOS-205ENST00000641950 531 ntBASIC19.75■□□□□ 0.75
LIM2P55344 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
LIM2P55344 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms