Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA3P55318 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
FOXA3P55318 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
FOXA3P55318 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA3P55318 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC15.61■□□□□ 0.09
FOXA3P55318 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA3P55318 AC010980.1-201ENST00000587192 1142 ntBASIC15.61■□□□□ 0.09
FOXA3P55318 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA3P55318 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
FOXA3P55318 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA3P55318 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA3P55318 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA3P55318 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
FOXA3P55318 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
FOXA3P55318 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA3P55318 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
FOXA3P55318 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
FOXA3P55318 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA3P55318 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA3P55318 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
FOXA3P55318 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
FOXA3P55318 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA3P55318 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA3P55318 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA3P55318 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA3P55318 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA3P55318 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA3P55318 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
FOXA3P55318 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
FOXA3P55318 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC15.59■□□□□ 0.09
FOXA3P55318 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
FOXA3P55318 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA3P55318 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC15.59■□□□□ 0.09
FOXA3P55318 AC068587.7-201ENST00000641602 218 ntBASIC15.59■□□□□ 0.09
FOXA3P55318 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA3P55318 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA3P55318 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA3P55318 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA3P55318 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA3P55318 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA3P55318 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
FOXA3P55318 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC15.58■□□□□ 0.09
FOXA3P55318 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
FOXA3P55318 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA3P55318 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA3P55318 CLTA-210ENST00000540080 989 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA3P55318 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA3P55318 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
FOXA3P55318 AC020907.5-201ENST00000624372 1936 ntBASIC15.58■□□□□ 0.08
FOXA3P55318 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
FOXA3P55318 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA3P55318 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA3P55318 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA3P55318 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
FOXA3P55318 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA3P55318 AC027702.1-201ENST00000563810 1770 ntBASIC15.57■□□□□ 0.08
FOXA3P55318 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA3P55318 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
FOXA3P55318 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA3P55318 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA3P55318 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA3P55318 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
FOXA3P55318 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms