Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 LINC01521-201ENST00000504184 1943 ntBASIC15.84■□□□□ 0.13
HLA-DMBP28068 FEM1AP1-201ENST00000431297 1995 ntBASIC15.84■□□□□ 0.13
HLA-DMBP28068 PLK5-205ENST00000642079 1969 ntBASIC15.84■□□□□ 0.13
HLA-DMBP28068 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 RARRES2P6-201ENST00000567333 442 ntBASIC15.84■□□□□ 0.13
HLA-DMBP28068 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 MPST-208ENST00000628507 698 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 AC055733.4-201ENST00000638462 1354 ntBASIC15.84■□□□□ 0.13
HLA-DMBP28068 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DMBP28068 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DMBP28068 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DMBP28068 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DMBP28068 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
HLA-DMBP28068 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 IRS3P-201ENST00000223076 1006 ntBASIC15.83■□□□□ 0.12
HLA-DMBP28068 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 LHPP-203ENST00000392757 840 ntTSL 3 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 AICDA-202ENST00000537228 667 ntTSL 5 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 AC009237.3-201ENST00000393279 1427 ntBASIC15.83■□□□□ 0.12
HLA-DMBP28068 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HLA-DMBP28068 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DMBP28068 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 AC005224.4-201ENST00000583262 1652 ntBASIC15.82■□□□□ 0.12
HLA-DMBP28068 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 ME2-216ENST00000639850 2331 ntTSL 5 BASIC15.82■□□□□ 0.12
HLA-DMBP28068 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DMBP28068 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC15.81■□□□□ 0.12
HLA-DMBP28068 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DMBP28068 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms