Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP1O15259 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC26.28■■□□□ 1.8
NPHP1O15259 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP1O15259 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC26.28■■□□□ 1.8
NPHP1O15259 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
NPHP1O15259 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC26.27■■□□□ 1.8
NPHP1O15259 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC26.27■■□□□ 1.8
NPHP1O15259 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC26.27■■□□□ 1.8
NPHP1O15259 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC26.27■■□□□ 1.8
NPHP1O15259 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC26.27■■□□□ 1.8
NPHP1O15259 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC26.27■■□□□ 1.8
NPHP1O15259 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC26.27■■□□□ 1.8
NPHP1O15259 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP1O15259 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NPHP1O15259 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
NPHP1O15259 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP1O15259 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
NPHP1O15259 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC26.26■■□□□ 1.79
NPHP1O15259 AC008550.1-201ENST00000511500 884 ntBASIC26.26■■□□□ 1.79
NPHP1O15259 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC26.26■■□□□ 1.79
NPHP1O15259 CYP2T3P-201ENST00000601990 817 ntBASIC26.26■■□□□ 1.79
NPHP1O15259 FAM21FP-204ENST00000608637 956 ntBASIC26.26■■□□□ 1.79
NPHP1O15259 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC26.25■■□□□ 1.79
NPHP1O15259 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC26.25■■□□□ 1.79
NPHP1O15259 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
NPHP1O15259 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC26.25■■□□□ 1.79
NPHP1O15259 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
NPHP1O15259 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC26.25■■□□□ 1.79
NPHP1O15259 UBE2SP1-201ENST00000450587 669 ntBASIC26.25■■□□□ 1.79
NPHP1O15259 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC26.25■■□□□ 1.79
NPHP1O15259 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 AC060766.5-201ENST00000590539 871 ntBASIC26.25■■□□□ 1.79
NPHP1O15259 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC26.25■■□□□ 1.79
NPHP1O15259 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP1O15259 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC26.24■■□□□ 1.79
NPHP1O15259 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC26.24■■□□□ 1.79
NPHP1O15259 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP1O15259 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP1O15259 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP1O15259 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP1O15259 MME-217ENST00000616757 1315 ntTSL 5 BASIC26.24■■□□□ 1.79
NPHP1O15259 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP1O15259 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP1O15259 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP1O15259 RHOD-202ENST00000532559 538 ntTSL 3 BASIC26.24■■□□□ 1.79
NPHP1O15259 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP1O15259 AL589743.5-201ENST00000616611 1050 ntBASIC26.24■■□□□ 1.79
NPHP1O15259 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP1O15259 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP1O15259 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC26.23■■□□□ 1.79
NPHP1O15259 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP1O15259 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP1O15259 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC26.23■■□□□ 1.79
NPHP1O15259 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC26.23■■□□□ 1.79
NPHP1O15259 AC091799.1-201ENST00000422823 811 ntBASIC26.23■■□□□ 1.79
NPHP1O15259 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC26.23■■□□□ 1.79
NPHP1O15259 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC26.23■■□□□ 1.79
NPHP1O15259 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC26.23■■□□□ 1.79
NPHP1O15259 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC26.23■■□□□ 1.79
NPHP1O15259 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC26.23■■□□□ 1.79
NPHP1O15259 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
NPHP1O15259 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP1O15259 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP1O15259 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC26.23■■□□□ 1.79
NPHP1O15259 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC26.23■■□□□ 1.79
NPHP1O15259 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP1O15259 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC26.22■■□□□ 1.79
NPHP1O15259 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC26.22■■□□□ 1.79
NPHP1O15259 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC26.22■■□□□ 1.79
NPHP1O15259 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
NPHP1O15259 HLA-B-256ENST00000639848 1089 ntBASIC26.22■■□□□ 1.79
NPHP1O15259 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP1O15259 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC26.21■■□□□ 1.79
NPHP1O15259 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.21■■□□□ 1.79
NPHP1O15259 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
NPHP1O15259 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC26.21■■□□□ 1.79
NPHP1O15259 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 AL359736.2-201ENST00000621992 437 ntBASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms