Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 RAP2CP1-201ENST00000605103 478 ntBASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 AC055733.4-201ENST00000638462 1354 ntBASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 AP004607.7-201ENST00000527152 1677 ntBASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 FEM1AP4-201ENST00000443167 1987 ntBASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHB3Q9Y5E6 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 AC073130.3-201ENST00000624389 2278 ntBASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHB3Q9Y5E6 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.39■□□□□ 0.86
PCDHB3Q9Y5E6 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PCDHB3Q9Y5E6 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.86
PCDHB3Q9Y5E6 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDHB3Q9Y5E6 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDHB3Q9Y5E6 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.39■□□□□ 0.86
PCDHB3Q9Y5E6 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PCDHB3Q9Y5E6 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHB3Q9Y5E6 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 AC104187.1-201ENST00000607510 612 ntBASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 AC011767.1-201ENST00000617410 1153 ntBASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHB3Q9Y5E6 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHB3Q9Y5E6 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.36■□□□□ 0.85
PCDHB3Q9Y5E6 AL109923.1-201ENST00000618799 583 ntBASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms