Protein–RNA interactions for Protein: Q9Y446

PKP3, Plakophilin-3, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3Q9Y446 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP3Q9Y446 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP3Q9Y446 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
PKP3Q9Y446 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.98■□□□□ 0.95
PKP3Q9Y446 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.98■□□□□ 0.95
PKP3Q9Y446 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PKP3Q9Y446 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PKP3Q9Y446 KRT18P5-201ENST00000436075 1291 ntBASIC20.98■□□□□ 0.95
PKP3Q9Y446 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
PKP3Q9Y446 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PKP3Q9Y446 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PKP3Q9Y446 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP3Q9Y446 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.98■□□□□ 0.95
PKP3Q9Y446 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.97■□□□□ 0.95
PKP3Q9Y446 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.97■□□□□ 0.95
PKP3Q9Y446 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.97■□□□□ 0.95
PKP3Q9Y446 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PKP3Q9Y446 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.97■□□□□ 0.95
PKP3Q9Y446 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP3Q9Y446 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
PKP3Q9Y446 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP3Q9Y446 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.97■□□□□ 0.95
PKP3Q9Y446 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PKP3Q9Y446 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.97■□□□□ 0.95
PKP3Q9Y446 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PKP3Q9Y446 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP3Q9Y446 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP3Q9Y446 AC007375.3-201ENST00000600936 2314 ntBASIC20.96■□□□□ 0.95
PKP3Q9Y446 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP3Q9Y446 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP3Q9Y446 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP3Q9Y446 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKP3Q9Y446 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKP3Q9Y446 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 KRT18P20-201ENST00000548986 1279 ntBASIC20.96■□□□□ 0.95
PKP3Q9Y446 KRT18P61-201ENST00000585825 1298 ntBASIC20.96■□□□□ 0.95
PKP3Q9Y446 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKP3Q9Y446 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP3Q9Y446 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP3Q9Y446 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP3Q9Y446 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.95■□□□□ 0.94
PKP3Q9Y446 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
PKP3Q9Y446 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.95■□□□□ 0.94
PKP3Q9Y446 AL162430.1-201ENST00000480705 870 ntBASIC20.95■□□□□ 0.94
PKP3Q9Y446 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PKP3Q9Y446 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PKP3Q9Y446 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
PKP3Q9Y446 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.94■□□□□ 0.94
PKP3Q9Y446 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 FEM1AP4-201ENST00000443167 1987 ntBASIC20.94■□□□□ 0.94
PKP3Q9Y446 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.94■□□□□ 0.94
PKP3Q9Y446 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 AL024507.2-201ENST00000606070 2574 ntBASIC20.94■□□□□ 0.94
PKP3Q9Y446 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP3Q9Y446 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.94■□□□□ 0.94
PKP3Q9Y446 KRT16P2-201ENST00000414673 1423 ntBASIC20.94■□□□□ 0.94
PKP3Q9Y446 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.94■□□□□ 0.94
PKP3Q9Y446 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PKP3Q9Y446 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.93■□□□□ 0.94
PKP3Q9Y446 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PKP3Q9Y446 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.93■□□□□ 0.94
PKP3Q9Y446 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.93■□□□□ 0.94
PKP3Q9Y446 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.93■□□□□ 0.94
PKP3Q9Y446 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.93■□□□□ 0.94
PKP3Q9Y446 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PKP3Q9Y446 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.93■□□□□ 0.94
PKP3Q9Y446 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKP3Q9Y446 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms