Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
DDX28Q9NUL7 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19■□□□□ 0.63
DDX28Q9NUL7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
DDX28Q9NUL7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19■□□□□ 0.63
DDX28Q9NUL7 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 SF1-220ENST00000626028 704 ntTSL 2 BASIC19■□□□□ 0.63
DDX28Q9NUL7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 SYT6-210ENST00000641643 1587 ntBASIC19■□□□□ 0.63
DDX28Q9NUL7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19■□□□□ 0.63
DDX28Q9NUL7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19■□□□□ 0.63
DDX28Q9NUL7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 SERBP1P1-201ENST00000396021 1160 ntBASIC18.99■□□□□ 0.63
DDX28Q9NUL7 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DDX28Q9NUL7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 AC090340.1-201ENST00000620778 4980 ntBASIC18.98■□□□□ 0.63
DDX28Q9NUL7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 AC011298.3-201ENST00000615796 283 ntBASIC18.98■□□□□ 0.63
DDX28Q9NUL7 AC136469.2-201ENST00000623944 1028 ntBASIC18.98■□□□□ 0.63
DDX28Q9NUL7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
DDX28Q9NUL7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 AC079089.2-201ENST00000531211 1277 ntBASIC18.97■□□□□ 0.63
DDX28Q9NUL7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 AC010542.4-201ENST00000563151 1910 ntBASIC18.97■□□□□ 0.63
DDX28Q9NUL7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
DDX28Q9NUL7 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms