Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SPENQ96T58 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SPENQ96T58 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
SPENQ96T58 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SPENQ96T58 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
SPENQ96T58 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SPENQ96T58 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SPENQ96T58 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 C11orf96-202ENST00000528572 1834 ntBASIC19■□□□□ 0.63
SPENQ96T58 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SPENQ96T58 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19■□□□□ 0.63
SPENQ96T58 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19■□□□□ 0.63
SPENQ96T58 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SPENQ96T58 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SPENQ96T58 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 MIR718-201ENST00000390190 70 ntBASIC18.99■□□□□ 0.63
SPENQ96T58 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SPENQ96T58 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.99■□□□□ 0.63
SPENQ96T58 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.99■□□□□ 0.63
SPENQ96T58 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.99■□□□□ 0.63
SPENQ96T58 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.99■□□□□ 0.63
SPENQ96T58 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.99■□□□□ 0.63
SPENQ96T58 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.99■□□□□ 0.63
SPENQ96T58 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.99■□□□□ 0.63
SPENQ96T58 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.99■□□□□ 0.63
SPENQ96T58 HLA-B-256ENST00000639848 1089 ntBASIC18.99■□□□□ 0.63
SPENQ96T58 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SPENQ96T58 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.99■□□□□ 0.63
SPENQ96T58 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SPENQ96T58 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.98■□□□□ 0.63
SPENQ96T58 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.98■□□□□ 0.63
SPENQ96T58 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SPENQ96T58 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SPENQ96T58 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.98■□□□□ 0.63
SPENQ96T58 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SPENQ96T58 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SPENQ96T58 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.98■□□□□ 0.63
SPENQ96T58 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.98■□□□□ 0.63
SPENQ96T58 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.98■□□□□ 0.63
SPENQ96T58 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SPENQ96T58 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SPENQ96T58 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.98■□□□□ 0.63
SPENQ96T58 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
SPENQ96T58 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.98■□□□□ 0.63
SPENQ96T58 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SPENQ96T58 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SPENQ96T58 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SPENQ96T58 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SPENQ96T58 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.97■□□□□ 0.63
SPENQ96T58 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SPENQ96T58 TSPY15P-201ENST00000457163 923 ntBASIC18.97■□□□□ 0.63
SPENQ96T58 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.97■□□□□ 0.63
SPENQ96T58 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SPENQ96T58 AC092053.2-201ENST00000640557 1818 ntBASIC18.97■□□□□ 0.63
SPENQ96T58 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SPENQ96T58 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SPENQ96T58 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.97■□□□□ 0.63
SPENQ96T58 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SPENQ96T58 RPPH1-201ENST00000516869 333 ntBASIC18.97■□□□□ 0.63
SPENQ96T58 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SPENQ96T58 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
SPENQ96T58 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SPENQ96T58 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SPENQ96T58 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.96■□□□□ 0.63
SPENQ96T58 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.96■□□□□ 0.63
SPENQ96T58 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SPENQ96T58 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SPENQ96T58 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.96■□□□□ 0.63
SPENQ96T58 PNMA6B-201ENST00000538162 1200 ntBASIC18.96■□□□□ 0.63
SPENQ96T58 FAM197Y4-202ENST00000622692 608 ntBASIC18.96■□□□□ 0.63
SPENQ96T58 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.96■□□□□ 0.63
SPENQ96T58 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SPENQ96T58 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
SPENQ96T58 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SPENQ96T58 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SPENQ96T58 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.95■□□□□ 0.62
SPENQ96T58 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SPENQ96T58 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms