Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.7■□□□□ 0.58
FOXN4Q96NZ1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 AL157384.1-201ENST00000445995 2473 ntBASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
FOXN4Q96NZ1 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 AC034268.1-201ENST00000441047 882 ntBASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXN4Q96NZ1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 AL358852.1-201ENST00000623174 1268 ntBASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
FOXN4Q96NZ1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 AL049796.1-201ENST00000565336 1766 ntBASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 YBX1P1-201ENST00000445822 960 ntBASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 AC012414.1-201ENST00000556676 535 ntBASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXN4Q96NZ1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXN4Q96NZ1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.64■□□□□ 0.58
FOXN4Q96NZ1 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
FOXN4Q96NZ1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.64■□□□□ 0.58
FOXN4Q96NZ1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms