Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ATG4AQ8WYN0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 AC073314.1-201ENST00000568729 2216 ntBASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 AC106739.1-201ENST00000617035 715 ntBASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.66■■□□□ 1.06
ATG4AQ8WYN0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 BX005040.4-201ENST00000637145 1518 ntBASIC21.65■■□□□ 1.06
ATG4AQ8WYN0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.64■■□□□ 1.06
ATG4AQ8WYN0 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 AC110285.6-201ENST00000617652 491 ntBASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ATG4AQ8WYN0 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 AF213884.3-201ENST00000563833 479 ntBASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ATG4AQ8WYN0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
ATG4AQ8WYN0 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 AP005212.1-201ENST00000581547 1997 ntBASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 EDA-201ENST00000338901 1233 ntBASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms