Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 TERT-206ENST00000508104 2486 ntTSL 5 BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 AC245052.3-201ENST00000450182 901 ntBASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 CYP2T3P-201ENST00000601990 817 ntBASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 FAM21FP-204ENST00000608637 956 ntBASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 AC073648.6-201ENST00000641589 218 ntBASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC27.73■■■□□ 2.03
USHBP1Q8N6Y0 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 AC026366.1-201ENST00000488803 879 ntBASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
USHBP1Q8N6Y0 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 AP003097.1-201ENST00000530657 1135 ntBASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 AC142381.4-202ENST00000563973 229 ntBASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 MMD2-204ENST00000612910 778 ntTSL 5 BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC27.71■■■□□ 2.03
USHBP1Q8N6Y0 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
USHBP1Q8N6Y0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
USHBP1Q8N6Y0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
USHBP1Q8N6Y0 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC27.7■■■□□ 2.03
USHBP1Q8N6Y0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC27.7■■■□□ 2.02
USHBP1Q8N6Y0 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
USHBP1Q8N6Y0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC27.7■■■□□ 2.02
USHBP1Q8N6Y0 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
USHBP1Q8N6Y0 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
USHBP1Q8N6Y0 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC27.7■■■□□ 2.02
USHBP1Q8N6Y0 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
USHBP1Q8N6Y0 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
USHBP1Q8N6Y0 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
USHBP1Q8N6Y0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
USHBP1Q8N6Y0 NME6-213ENST00000451657 871 ntTSL 2 BASIC27.69■■■□□ 2.02
USHBP1Q8N6Y0 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC27.69■■■□□ 2.02
USHBP1Q8N6Y0 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
USHBP1Q8N6Y0 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
USHBP1Q8N6Y0 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 AC008403.3-201ENST00000598924 454 ntBASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
USHBP1Q8N6Y0 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC27.67■■■□□ 2.02
USHBP1Q8N6Y0 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 CDV3P1-201ENST00000471403 739 ntBASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms