Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CSMD3Q7Z407 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CSMD3Q7Z407 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CSMD3Q7Z407 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CSMD3Q7Z407 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CSMD3Q7Z407 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CSMD3Q7Z407 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CSMD3Q7Z407 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 RN7SL471P-201ENST00000580476 299 ntBASIC14.67□□□□□ -0.06
CSMD3Q7Z407 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 AC003102.1-202ENST00000563394 1796 ntBASIC14.67□□□□□ -0.06
CSMD3Q7Z407 CREM-210ENST00000374721 2020 ntTSL 5 BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 POM121L13P-201ENST00000422362 380 ntBASIC14.67□□□□□ -0.06
CSMD3Q7Z407 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 AL049637.2-201ENST00000641778 930 ntBASIC14.67□□□□□ -0.06
CSMD3Q7Z407 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CSMD3Q7Z407 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 AC026471.6-201ENST00000622954 1905 ntBASIC14.66□□□□□ -0.06
CSMD3Q7Z407 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC14.66□□□□□ -0.06
CSMD3Q7Z407 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 AC093323.1-202ENST00000635031 2045 ntBASIC14.65□□□□□ -0.06
CSMD3Q7Z407 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 LSM12P1-201ENST00000411836 588 ntBASIC14.65□□□□□ -0.06
CSMD3Q7Z407 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 AL353708.3-201ENST00000610272 989 ntBASIC14.65□□□□□ -0.06
CSMD3Q7Z407 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 AC145285.6-201ENST00000604632 637 ntBASIC14.65□□□□□ -0.06
CSMD3Q7Z407 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC14.65□□□□□ -0.06
CSMD3Q7Z407 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 KRT17P3-201ENST00000420566 1262 ntBASIC14.64□□□□□ -0.07
CSMD3Q7Z407 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 AC079089.2-201ENST00000531211 1277 ntBASIC14.64□□□□□ -0.07
CSMD3Q7Z407 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CSMD3Q7Z407 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CSMD3Q7Z407 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CSMD3Q7Z407 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CSMD3Q7Z407 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CSMD3Q7Z407 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CSMD3Q7Z407 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms