Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC28.18■■■□□ 2.1
USP54Q70EL1 HLA-B-256ENST00000639848 1089 ntBASIC28.18■■■□□ 2.1
USP54Q70EL1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USP54Q70EL1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP54Q70EL1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC28.17■■■□□ 2.1
USP54Q70EL1 LSM12P1-201ENST00000411836 588 ntBASIC28.17■■■□□ 2.1
USP54Q70EL1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
USP54Q70EL1 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC28.17■■■□□ 2.1
USP54Q70EL1 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP54Q70EL1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USP54Q70EL1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP54Q70EL1 CYP21A1P-202ENST00000354927 1481 ntBASIC28.17■■■□□ 2.1
USP54Q70EL1 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP54Q70EL1 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP54Q70EL1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC28.16■■■□□ 2.1
USP54Q70EL1 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC28.16■■■□□ 2.1
USP54Q70EL1 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC28.16■■■□□ 2.1
USP54Q70EL1 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC28.16■■■□□ 2.1
USP54Q70EL1 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC28.16■■■□□ 2.1
USP54Q70EL1 AC073648.6-201ENST00000641589 218 ntBASIC28.16■■■□□ 2.1
USP54Q70EL1 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USP54Q70EL1 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP54Q70EL1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP54Q70EL1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP54Q70EL1 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC28.16■■■□□ 2.1
USP54Q70EL1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP54Q70EL1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP54Q70EL1 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC28.16■■■□□ 2.1
USP54Q70EL1 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
USP54Q70EL1 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC28.16■■■□□ 2.1
USP54Q70EL1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
USP54Q70EL1 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC28.16■■■□□ 2.1
USP54Q70EL1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
USP54Q70EL1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 AC069544.1-201ENST00000609399 999 ntBASIC28.15■■■□□ 2.1
USP54Q70EL1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC28.15■■■□□ 2.1
USP54Q70EL1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP54Q70EL1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC28.14■■■□□ 2.1
USP54Q70EL1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC28.14■■■□□ 2.1
USP54Q70EL1 SLC29A4P2-201ENST00000504749 1089 ntBASIC28.14■■■□□ 2.1
USP54Q70EL1 AC142381.4-202ENST00000563973 229 ntBASIC28.14■■■□□ 2.1
USP54Q70EL1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP54Q70EL1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP54Q70EL1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.09
USP54Q70EL1 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP54Q70EL1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.09
USP54Q70EL1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.09
USP54Q70EL1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC28.13■■■□□ 2.09
USP54Q70EL1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
USP54Q70EL1 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC28.13■■■□□ 2.09
USP54Q70EL1 USP36-216ENST00000589424 970 ntTSL 5 BASIC28.13■■■□□ 2.09
USP54Q70EL1 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC28.13■■■□□ 2.09
USP54Q70EL1 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP54Q70EL1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
USP54Q70EL1 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
USP54Q70EL1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC28.13■■■□□ 2.09
USP54Q70EL1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
USP54Q70EL1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP54Q70EL1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP54Q70EL1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC28.13■■■□□ 2.09
USP54Q70EL1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC28.13■■■□□ 2.09
USP54Q70EL1 AL589743.5-201ENST00000616611 1050 ntBASIC28.13■■■□□ 2.09
USP54Q70EL1 C1orf229-201ENST00000623686 2258 ntBASIC28.13■■■□□ 2.09
USP54Q70EL1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC28.12■■■□□ 2.09
USP54Q70EL1 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
USP54Q70EL1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP54Q70EL1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC28.12■■■□□ 2.09
USP54Q70EL1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC28.12■■■□□ 2.09
USP54Q70EL1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP54Q70EL1 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP54Q70EL1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC28.11■■■□□ 2.09
USP54Q70EL1 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USP54Q70EL1 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP54Q70EL1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC28.11■■■□□ 2.09
USP54Q70EL1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC28.11■■■□□ 2.09
USP54Q70EL1 RNF121-214ENST00000533380 870 ntTSL 3 BASIC28.11■■■□□ 2.09
USP54Q70EL1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC28.11■■■□□ 2.09
USP54Q70EL1 AL359736.2-201ENST00000621992 437 ntBASIC28.11■■■□□ 2.09
USP54Q70EL1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USP54Q70EL1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP54Q70EL1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP54Q70EL1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USP54Q70EL1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
USP54Q70EL1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP54Q70EL1 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
USP54Q70EL1 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms