Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDH1Q08174 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PCDH1Q08174 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDH1Q08174 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.14■□□□□ 0.82
PCDH1Q08174 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDH1Q08174 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PCDH1Q08174 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDH1Q08174 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.14■□□□□ 0.81
PCDH1Q08174 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PCDH1Q08174 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PCDH1Q08174 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.14■□□□□ 0.81
PCDH1Q08174 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDH1Q08174 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.14■□□□□ 0.81
PCDH1Q08174 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDH1Q08174 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDH1Q08174 CCDC92B-201ENST00000575506 885 ntBASIC20.14■□□□□ 0.81
PCDH1Q08174 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.14■□□□□ 0.81
PCDH1Q08174 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PCDH1Q08174 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDH1Q08174 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.13■□□□□ 0.81
PCDH1Q08174 KRT16P2-201ENST00000414673 1423 ntBASIC20.13■□□□□ 0.81
PCDH1Q08174 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDH1Q08174 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
PCDH1Q08174 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
PCDH1Q08174 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.13■□□□□ 0.81
PCDH1Q08174 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDH1Q08174 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PCDH1Q08174 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDH1Q08174 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDH1Q08174 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDH1Q08174 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDH1Q08174 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.13■□□□□ 0.81
PCDH1Q08174 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDH1Q08174 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDH1Q08174 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDH1Q08174 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDH1Q08174 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PCDH1Q08174 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDH1Q08174 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDH1Q08174 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.12■□□□□ 0.81
PCDH1Q08174 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDH1Q08174 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.12■□□□□ 0.81
PCDH1Q08174 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.12■□□□□ 0.81
PCDH1Q08174 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDH1Q08174 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.12■□□□□ 0.81
PCDH1Q08174 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDH1Q08174 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDH1Q08174 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDH1Q08174 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDH1Q08174 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
PCDH1Q08174 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.11■□□□□ 0.81
PCDH1Q08174 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
PCDH1Q08174 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
PCDH1Q08174 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDH1Q08174 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 KRT18P14-201ENST00000534205 1250 ntBASIC20.11■□□□□ 0.81
PCDH1Q08174 KRT18P20-201ENST00000548986 1279 ntBASIC20.11■□□□□ 0.81
PCDH1Q08174 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.11■□□□□ 0.81
PCDH1Q08174 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDH1Q08174 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDH1Q08174 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDH1Q08174 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.11■□□□□ 0.81
PCDH1Q08174 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDH1Q08174 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
PCDH1Q08174 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDH1Q08174 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDH1Q08174 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PCDH1Q08174 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDH1Q08174 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 DUX4L2-201ENST00000561772 1275 ntBASIC20.1■□□□□ 0.81
PCDH1Q08174 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.1■□□□□ 0.81
PCDH1Q08174 DUX4L6-201ENST00000626483 1275 ntBASIC20.1■□□□□ 0.81
PCDH1Q08174 DUX4L1-201ENST00000627662 1275 ntBASIC20.1■□□□□ 0.81
PCDH1Q08174 DUX4L8-201ENST00000629013 1275 ntBASIC20.1■□□□□ 0.81
PCDH1Q08174 DUX4L3-201ENST00000630187 1275 ntBASIC20.1■□□□□ 0.81
PCDH1Q08174 DUX4L7-201ENST00000630678 1275 ntBASIC20.1■□□□□ 0.81
PCDH1Q08174 DUX4L5-201ENST00000630834 1275 ntBASIC20.1■□□□□ 0.81
PCDH1Q08174 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDH1Q08174 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PCDH1Q08174 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDH1Q08174 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.1■□□□□ 0.81
PCDH1Q08174 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDH1Q08174 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms