Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HSPG2P98160 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HSPG2P98160 KRT126P-201ENST00000549467 1181 ntBASIC13.16□□□□□ -0.3
HSPG2P98160 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC13.16□□□□□ -0.3
HSPG2P98160 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC13.16□□□□□ -0.3
HSPG2P98160 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC13.15□□□□□ -0.3
HSPG2P98160 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HSPG2P98160 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC13.15□□□□□ -0.3
HSPG2P98160 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC13.15□□□□□ -0.3
HSPG2P98160 AL135905.2-201ENST00000584934 1404 ntBASIC13.15□□□□□ -0.3
HSPG2P98160 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC13.15□□□□□ -0.3
HSPG2P98160 USF2-205ENST00000594064 1179 ntTSL 2 BASIC13.15□□□□□ -0.3
HSPG2P98160 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HSPG2P98160 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
HSPG2P98160 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 TPM4P1-201ENST00000436100 807 ntBASIC13.15□□□□□ -0.3
HSPG2P98160 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC13.15□□□□□ -0.3
HSPG2P98160 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC13.15□□□□□ -0.3
HSPG2P98160 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HSPG2P98160 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC13.15□□□□□ -0.3
HSPG2P98160 KRT18P56-201ENST00000507275 550 ntBASIC13.15□□□□□ -0.3
HSPG2P98160 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HSPG2P98160 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC13.15□□□□□ -0.3
HSPG2P98160 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC13.14□□□□□ -0.31
HSPG2P98160 OR7E47P-201ENST00000546390 1422 ntBASIC13.14□□□□□ -0.31
HSPG2P98160 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 AC026471.5-201ENST00000615068 467 ntBASIC13.14□□□□□ -0.31
HSPG2P98160 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
HSPG2P98160 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HSPG2P98160 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC13.14□□□□□ -0.31
HSPG2P98160 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC13.14□□□□□ -0.31
HSPG2P98160 HES2-206ENST00000489730 730 ntTSL 2 BASIC13.14□□□□□ -0.31
HSPG2P98160 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC13.14□□□□□ -0.31
HSPG2P98160 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC13.14□□□□□ -0.31
HSPG2P98160 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HSPG2P98160 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HSPG2P98160 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HSPG2P98160 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HSPG2P98160 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC13.13□□□□□ -0.31
HSPG2P98160 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC13.13□□□□□ -0.31
HSPG2P98160 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HSPG2P98160 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
HSPG2P98160 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HSPG2P98160 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC13.13□□□□□ -0.31
HSPG2P98160 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC13.13□□□□□ -0.31
HSPG2P98160 AP001412.1-201ENST00000608405 714 ntBASIC13.13□□□□□ -0.31
HSPG2P98160 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HSPG2P98160 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 LINC01960-201ENST00000563759 1884 ntBASIC13.13□□□□□ -0.31
HSPG2P98160 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC13.13□□□□□ -0.31
HSPG2P98160 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC13.13□□□□□ -0.31
HSPG2P98160 FAM21FP-204ENST00000608637 956 ntBASIC13.13□□□□□ -0.31
HSPG2P98160 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HSPG2P98160 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 AC004812.2-201ENST00000611079 2094 ntBASIC13.12□□□□□ -0.31
HSPG2P98160 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC13.12□□□□□ -0.31
HSPG2P98160 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC13.12□□□□□ -0.31
HSPG2P98160 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC13.12□□□□□ -0.31
HSPG2P98160 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms