Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHMT2P34897 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SHMT2P34897 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHMT2P34897 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHMT2P34897 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SHMT2P34897 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.44■□□□□ 0.86
SHMT2P34897 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.44■□□□□ 0.86
SHMT2P34897 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SHMT2P34897 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.44■□□□□ 0.86
SHMT2P34897 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.44■□□□□ 0.86
SHMT2P34897 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 AC120498.10-201ENST00000621827 505 ntBASIC20.44■□□□□ 0.86
SHMT2P34897 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.44■□□□□ 0.86
SHMT2P34897 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.44■□□□□ 0.86
SHMT2P34897 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.44■□□□□ 0.86
SHMT2P34897 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHMT2P34897 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.44■□□□□ 0.86
SHMT2P34897 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHMT2P34897 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHMT2P34897 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SHMT2P34897 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHMT2P34897 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SHMT2P34897 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHMT2P34897 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
SHMT2P34897 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.43■□□□□ 0.86
SHMT2P34897 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.43■□□□□ 0.86
SHMT2P34897 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SHMT2P34897 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.43■□□□□ 0.86
SHMT2P34897 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHMT2P34897 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHMT2P34897 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.43■□□□□ 0.86
SHMT2P34897 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHMT2P34897 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SHMT2P34897 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHMT2P34897 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SHMT2P34897 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHMT2P34897 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHMT2P34897 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.42■□□□□ 0.86
SHMT2P34897 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.42■□□□□ 0.86
SHMT2P34897 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.42■□□□□ 0.86
SHMT2P34897 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.42■□□□□ 0.86
SHMT2P34897 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.42■□□□□ 0.86
SHMT2P34897 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHMT2P34897 UBE2DNL-204ENST00000602536 740 ntBASIC20.42■□□□□ 0.86
SHMT2P34897 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.42■□□□□ 0.86
SHMT2P34897 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHMT2P34897 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHMT2P34897 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SHMT2P34897 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SHMT2P34897 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.41■□□□□ 0.86
SHMT2P34897 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.41■□□□□ 0.86
SHMT2P34897 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 AC004911.1-201ENST00000416316 871 ntBASIC20.41■□□□□ 0.86
SHMT2P34897 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.41■□□□□ 0.86
SHMT2P34897 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.41■□□□□ 0.86
SHMT2P34897 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.41■□□□□ 0.86
SHMT2P34897 BID-214ENST00000617586 542 ntTSL 5 BASIC20.41■□□□□ 0.86
SHMT2P34897 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SHMT2P34897 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SHMT2P34897 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SHMT2P34897 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
SHMT2P34897 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 AC005229.4-201ENST00000610085 2198 ntBASIC20.41■□□□□ 0.86
SHMT2P34897 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHMT2P34897 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.41■□□□□ 0.86
SHMT2P34897 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHMT2P34897 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHMT2P34897 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHMT2P34897 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHMT2P34897 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHMT2P34897 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.4■□□□□ 0.86
SHMT2P34897 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHMT2P34897 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHMT2P34897 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.4■□□□□ 0.86
SHMT2P34897 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.4■□□□□ 0.86
SHMT2P34897 MYCNOS-205ENST00000641950 531 ntBASIC20.4■□□□□ 0.86
SHMT2P34897 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.4■□□□□ 0.86
SHMT2P34897 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.39■□□□□ 0.86
SHMT2P34897 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SHMT2P34897 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.39■□□□□ 0.86
SHMT2P34897 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHMT2P34897 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.39■□□□□ 0.85
SHMT2P34897 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms