Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC15.36■□□□□ 0.05
CKS2P33552 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CKS2P33552 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CKS2P33552 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CKS2P33552 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CKS2P33552 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC15.36■□□□□ 0.05
CKS2P33552 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC15.36■□□□□ 0.05
CKS2P33552 DUX4L18-201ENST00000553347 1267 ntBASIC15.36■□□□□ 0.05
CKS2P33552 U85056.1-201ENST00000616429 682 ntBASIC15.36■□□□□ 0.05
CKS2P33552 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC15.36■□□□□ 0.05
CKS2P33552 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CKS2P33552 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CKS2P33552 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.36■□□□□ 0.05
CKS2P33552 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CKS2P33552 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.36■□□□□ 0.05
CKS2P33552 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CKS2P33552 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC15.35■□□□□ 0.05
CKS2P33552 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CKS2P33552 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.35■□□□□ 0.05
CKS2P33552 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC15.35■□□□□ 0.05
CKS2P33552 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 EI24-211ENST00000534546 1544 ntTSL 2 BASIC15.35■□□□□ 0.05
CKS2P33552 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 ABHD17AP3-201ENST00000503096 1137 ntBASIC15.35■□□□□ 0.05
CKS2P33552 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC15.35■□□□□ 0.05
CKS2P33552 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.35■□□□□ 0.05
CKS2P33552 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 USP45-205ENST00000472914 1617 ntTSL 5 BASIC15.35■□□□□ 0.05
CKS2P33552 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CKS2P33552 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CKS2P33552 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.34■□□□□ 0.05
CKS2P33552 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 KRT18P60-201ENST00000312876 1297 ntBASIC15.34■□□□□ 0.05
CKS2P33552 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC15.34■□□□□ 0.05
CKS2P33552 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.34■□□□□ 0.05
CKS2P33552 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CKS2P33552 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC15.34■□□□□ 0.05
CKS2P33552 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CKS2P33552 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC15.34■□□□□ 0.05
CKS2P33552 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CKS2P33552 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
CKS2P33552 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.05
CKS2P33552 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CKS2P33552 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CKS2P33552 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.33■□□□□ 0.05
CKS2P33552 AC087289.5-201ENST00000586076 3175 ntBASIC15.33■□□□□ 0.04
CKS2P33552 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CKS2P33552 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC15.33■□□□□ 0.04
CKS2P33552 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC15.33■□□□□ 0.04
CKS2P33552 MIR6722-201ENST00000617286 78 ntBASIC15.33■□□□□ 0.04
CKS2P33552 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CKS2P33552 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC15.33■□□□□ 0.04
CKS2P33552 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CKS2P33552 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CKS2P33552 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.33■□□□□ 0.04
CKS2P33552 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms