Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMS3P0CW19 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMS3P0CW19 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
LIMS3P0CW19 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.58■□□□□ 0.57
LIMS3P0CW19 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMS3P0CW19 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMS3P0CW19 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.58■□□□□ 0.56
LIMS3P0CW19 AP005435.1-201ENST00000529293 1178 ntBASIC18.58■□□□□ 0.56
LIMS3P0CW19 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMS3P0CW19 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMS3P0CW19 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.58■□□□□ 0.56
LIMS3P0CW19 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
LIMS3P0CW19 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMS3P0CW19 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMS3P0CW19 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
LIMS3P0CW19 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.58■□□□□ 0.56
LIMS3P0CW19 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.58■□□□□ 0.56
LIMS3P0CW19 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIMS3P0CW19 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIMS3P0CW19 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMS3P0CW19 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.57■□□□□ 0.56
LIMS3P0CW19 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMS3P0CW19 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 AC112907.3-201ENST00000577781 2400 ntBASIC18.57■□□□□ 0.56
LIMS3P0CW19 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMS3P0CW19 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMS3P0CW19 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.57■□□□□ 0.56
LIMS3P0CW19 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.57■□□□□ 0.56
LIMS3P0CW19 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIMS3P0CW19 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMS3P0CW19 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMS3P0CW19 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMS3P0CW19 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMS3P0CW19 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 RARRES2P1-201ENST00000474487 481 ntBASIC18.56■□□□□ 0.56
LIMS3P0CW19 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIMS3P0CW19 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMS3P0CW19 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMS3P0CW19 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIMS3P0CW19 AL512408.1-201ENST00000569378 2000 ntBASIC18.56■□□□□ 0.56
LIMS3P0CW19 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMS3P0CW19 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMS3P0CW19 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIMS3P0CW19 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMS3P0CW19 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 KRT16P3-201ENST00000439127 1283 ntBASIC18.55■□□□□ 0.56
LIMS3P0CW19 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 AL356740.2-201ENST00000601559 647 ntBASIC18.55■□□□□ 0.56
LIMS3P0CW19 AC092171.4-201ENST00000609130 632 ntBASIC18.55■□□□□ 0.56
LIMS3P0CW19 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMS3P0CW19 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMS3P0CW19 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms