Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CACNA1FO60840 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
CACNA1FO60840 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CACNA1FO60840 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CACNA1FO60840 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC26.55■■□□□ 1.84
CACNA1FO60840 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CACNA1FO60840 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CACNA1FO60840 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CACNA1FO60840 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CACNA1FO60840 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC26.55■■□□□ 1.84
CACNA1FO60840 APTR-203ENST00000430801 583 ntTSL 5 BASIC26.55■■□□□ 1.84
CACNA1FO60840 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CACNA1FO60840 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC26.55■■□□□ 1.84
CACNA1FO60840 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC26.54■■□□□ 1.84
CACNA1FO60840 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
CACNA1FO60840 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CACNA1FO60840 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC26.54■■□□□ 1.84
CACNA1FO60840 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
CACNA1FO60840 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CACNA1FO60840 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CACNA1FO60840 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CACNA1FO60840 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CACNA1FO60840 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC26.53■■□□□ 1.84
CACNA1FO60840 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC26.53■■□□□ 1.84
CACNA1FO60840 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CACNA1FO60840 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CACNA1FO60840 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CACNA1FO60840 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
CACNA1FO60840 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CACNA1FO60840 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CACNA1FO60840 SAPCD2P1-201ENST00000395413 1184 ntBASIC26.53■■□□□ 1.84
CACNA1FO60840 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC26.53■■□□□ 1.84
CACNA1FO60840 AC006970.2-201ENST00000450065 779 ntBASIC26.53■■□□□ 1.84
CACNA1FO60840 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC26.53■■□□□ 1.84
CACNA1FO60840 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CACNA1FO60840 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
CACNA1FO60840 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CACNA1FO60840 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
CACNA1FO60840 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CACNA1FO60840 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC26.52■■□□□ 1.84
CACNA1FO60840 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.52■■□□□ 1.84
CACNA1FO60840 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC26.52■■□□□ 1.84
CACNA1FO60840 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC26.52■■□□□ 1.84
CACNA1FO60840 AC016405.3-201ENST00000607710 860 ntBASIC26.52■■□□□ 1.84
CACNA1FO60840 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC26.52■■□□□ 1.84
CACNA1FO60840 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
CACNA1FO60840 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CACNA1FO60840 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC26.52■■□□□ 1.84
CACNA1FO60840 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CACNA1FO60840 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CACNA1FO60840 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CACNA1FO60840 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
CACNA1FO60840 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
CACNA1FO60840 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
CACNA1FO60840 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CACNA1FO60840 AC087633.2-202ENST00000565166 1439 ntBASIC26.51■■□□□ 1.83
CACNA1FO60840 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CACNA1FO60840 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CACNA1FO60840 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC26.51■■□□□ 1.83
CACNA1FO60840 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CACNA1FO60840 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC26.51■■□□□ 1.83
CACNA1FO60840 OR10C1-204ENST00000622521 1039 ntBASIC26.51■■□□□ 1.83
CACNA1FO60840 GAMT-205ENST00000640762 751 ntTSL 5 BASIC26.51■■□□□ 1.83
CACNA1FO60840 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
CACNA1FO60840 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
CACNA1FO60840 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC26.51■■□□□ 1.83
CACNA1FO60840 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC26.51■■□□□ 1.83
CACNA1FO60840 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CACNA1FO60840 AC116050.2-201ENST00000612102 1779 ntBASIC26.5■■□□□ 1.83
CACNA1FO60840 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
CACNA1FO60840 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC26.5■■□□□ 1.83
CACNA1FO60840 AC104771.1-201ENST00000603335 964 ntBASIC26.5■■□□□ 1.83
CACNA1FO60840 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CACNA1FO60840 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
CACNA1FO60840 AC005181.1-201ENST00000604782 1256 ntBASIC26.49■■□□□ 1.83
CACNA1FO60840 MARS-234ENST00000630571 216 ntTSL 5 BASIC26.49■■□□□ 1.83
CACNA1FO60840 MARS-235ENST00000630803 183 ntTSL 3 BASIC26.49■■□□□ 1.83
CACNA1FO60840 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CACNA1FO60840 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
CACNA1FO60840 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
CACNA1FO60840 DYM-203ENST00000442713 2147 ntTSL 2 BASIC26.49■■□□□ 1.83
CACNA1FO60840 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CACNA1FO60840 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC26.49■■□□□ 1.83
CACNA1FO60840 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC26.49■■□□□ 1.83
CACNA1FO60840 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC26.49■■□□□ 1.83
CACNA1FO60840 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC26.49■■□□□ 1.83
CACNA1FO60840 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CACNA1FO60840 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CACNA1FO60840 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
CACNA1FO60840 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC26.48■■□□□ 1.83
CACNA1FO60840 PTPA-214ENST00000423100 988 ntTSL 2 BASIC26.48■■□□□ 1.83
CACNA1FO60840 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC26.48■■□□□ 1.83
CACNA1FO60840 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
CACNA1FO60840 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
CACNA1FO60840 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC26.48■■□□□ 1.83
CACNA1FO60840 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC26.48■■□□□ 1.83
CACNA1FO60840 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CACNA1FO60840 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC26.48■■□□□ 1.83
CACNA1FO60840 WWC2-AS2-201ENST00000578387 2183 ntBASIC26.48■■□□□ 1.83
CACNA1FO60840 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms