Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC3O43542 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
XRCC3O43542 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
XRCC3O43542 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
XRCC3O43542 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
XRCC3O43542 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.89■□□□□ 0.46
XRCC3O43542 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.89■□□□□ 0.46
XRCC3O43542 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
XRCC3O43542 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.89■□□□□ 0.45
XRCC3O43542 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC3O43542 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
XRCC3O43542 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC3O43542 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC3O43542 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
XRCC3O43542 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
XRCC3O43542 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.89■□□□□ 0.45
XRCC3O43542 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC3O43542 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC3O43542 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC3O43542 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
XRCC3O43542 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.89■□□□□ 0.45
XRCC3O43542 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.88■□□□□ 0.45
XRCC3O43542 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 MIR4787-201ENST00000607364 84 ntBASIC17.88■□□□□ 0.45
XRCC3O43542 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC17.88■□□□□ 0.45
XRCC3O43542 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.88■□□□□ 0.45
XRCC3O43542 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
XRCC3O43542 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.88■□□□□ 0.45
XRCC3O43542 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
XRCC3O43542 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.87■□□□□ 0.45
XRCC3O43542 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.87■□□□□ 0.45
XRCC3O43542 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.87■□□□□ 0.45
XRCC3O43542 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.87■□□□□ 0.45
XRCC3O43542 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.87■□□□□ 0.45
XRCC3O43542 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.87■□□□□ 0.45
XRCC3O43542 AL162377.1-201ENST00000618844 1793 ntBASIC17.87■□□□□ 0.45
XRCC3O43542 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.87■□□□□ 0.45
XRCC3O43542 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
XRCC3O43542 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
XRCC3O43542 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.87■□□□□ 0.45
XRCC3O43542 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
XRCC3O43542 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
XRCC3O43542 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.86■□□□□ 0.45
XRCC3O43542 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.86■□□□□ 0.45
XRCC3O43542 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
XRCC3O43542 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
XRCC3O43542 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.86■□□□□ 0.45
XRCC3O43542 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
XRCC3O43542 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
XRCC3O43542 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
XRCC3O43542 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
XRCC3O43542 AP006587.3-201ENST00000525742 1516 ntBASIC17.86■□□□□ 0.45
XRCC3O43542 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.86■□□□□ 0.45
XRCC3O43542 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
XRCC3O43542 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.86■□□□□ 0.45
XRCC3O43542 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
XRCC3O43542 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
XRCC3O43542 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.86■□□□□ 0.45
XRCC3O43542 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
XRCC3O43542 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.86■□□□□ 0.45
XRCC3O43542 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
XRCC3O43542 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.86■□□□□ 0.45
XRCC3O43542 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.86■□□□□ 0.45
XRCC3O43542 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
XRCC3O43542 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
XRCC3O43542 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
XRCC3O43542 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
XRCC3O43542 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
XRCC3O43542 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
XRCC3O43542 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
XRCC3O43542 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms