Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 AC131281.2-201ENST00000520478 145 ntBASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM49D1C9J1S8 AC121338.2-201ENST00000622535 1744 ntBASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM49D1C9J1S8 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 AC133561.4-201ENST00000566112 224 ntBASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM49D1C9J1S8 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 AL391422.3-201ENST00000603791 2761 ntBASIC20.9■□□□□ 0.94
TRIM49D1C9J1S8 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM49D1C9J1S8 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.89■□□□□ 0.94
TRIM49D1C9J1S8 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM49D1C9J1S8 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM49D1C9J1S8 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.89■□□□□ 0.94
TRIM49D1C9J1S8 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM49D1C9J1S8 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM49D1C9J1S8 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
TRIM49D1C9J1S8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 AC027702.1-201ENST00000563810 1770 ntBASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 BX842568.3-201ENST00000418104 571 ntBASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
TRIM49D1C9J1S8 AL121603.2-201ENST00000557373 2117 ntBASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms