Protein–RNA interactions for Protein: Q9Y5H5

PCDHA9, Protocadherin alpha-9, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9Q9Y5H5 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA9Q9Y5H5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHA9Q9Y5H5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHA9Q9Y5H5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHA9Q9Y5H5 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 AC003102.1-202ENST00000563394 1796 ntBASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 IRS3P-201ENST00000223076 1006 ntBASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 AL354811.1-201ENST00000610286 706 ntBASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA9Q9Y5H5 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 AL358852.1-201ENST00000623174 1268 ntBASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 AC005224.4-201ENST00000583262 1652 ntBASIC20.13■□□□□ 0.81
PCDHA9Q9Y5H5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 AC055733.4-201ENST00000638462 1354 ntBASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PCDHA9Q9Y5H5 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
PCDHA9Q9Y5H5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PCDHA9Q9Y5H5 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHA9Q9Y5H5 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHA9Q9Y5H5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms