Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 BX005040.4-201ENST00000637145 1518 ntBASIC21.17■□□□□ 0.98
LRRC39Q96DD0 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRC39Q96DD0 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 GABARAPL3-202ENST00000624044 1851 ntBASIC21.16■□□□□ 0.98
LRRC39Q96DD0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 AC099791.1-201ENST00000416440 715 ntBASIC21.16■□□□□ 0.98
LRRC39Q96DD0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 AC008764.7-201ENST00000593779 1081 ntBASIC21.16■□□□□ 0.98
LRRC39Q96DD0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC39Q96DD0 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 AC121338.2-201ENST00000622535 1744 ntBASIC21.15■□□□□ 0.98
LRRC39Q96DD0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.15■□□□□ 0.98
LRRC39Q96DD0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRC39Q96DD0 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRC39Q96DD0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRC39Q96DD0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
LRRC39Q96DD0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 TSPY26P-201ENST00000476365 1326 ntBASIC21.14■□□□□ 0.97
LRRC39Q96DD0 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.14■□□□□ 0.97
LRRC39Q96DD0 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 AP005212.1-201ENST00000581547 1997 ntBASIC21.14■□□□□ 0.97
LRRC39Q96DD0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
LRRC39Q96DD0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC39Q96DD0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 EDA-201ENST00000338901 1233 ntBASIC21.12■□□□□ 0.97
LRRC39Q96DD0 MIR572-201ENST00000384983 95 ntBASIC21.12■□□□□ 0.97
LRRC39Q96DD0 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
LRRC39Q96DD0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms