Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 RPS2P52-201ENST00000469610 820 ntBASIC6.43□□□□□ -1.38
SYNE1Q8NF91 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
SYNE1Q8NF91 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 AL512625.2-201ENST00000417533 625 ntBASIC6.42□□□□□ -1.38
SYNE1Q8NF91 AC093827.2-201ENST00000512654 315 ntBASIC6.42□□□□□ -1.38
SYNE1Q8NF91 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 SLC7A5P1-201ENST00000568957 537 ntBASIC6.42□□□□□ -1.38
SYNE1Q8NF91 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 EEF1DP3-203ENST00000566025 782 ntBASIC6.42□□□□□ -1.38
SYNE1Q8NF91 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
SYNE1Q8NF91 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 AC137767.1-201ENST00000602918 1920 ntBASIC6.41□□□□□ -1.38
SYNE1Q8NF91 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 MKRN4P-201ENST00000444706 1521 ntBASIC6.41□□□□□ -1.38
SYNE1Q8NF91 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 AC091874.3-201ENST00000512672 1195 ntBASIC6.41□□□□□ -1.38
SYNE1Q8NF91 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 MMD2-204ENST00000612910 778 ntTSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 LINC00526-201ENST00000581067 1875 ntBASIC6.41□□□□□ -1.38
SYNE1Q8NF91 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 AP004607.7-201ENST00000527152 1677 ntBASIC6.41□□□□□ -1.38
SYNE1Q8NF91 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC6.41□□□□□ -1.38
SYNE1Q8NF91 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms