Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 AP001330.3-201ENST00000520123 633 ntBASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP4Q8N3C7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 TSPY26P-201ENST00000476365 1326 ntBASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 EDA-201ENST00000338901 1233 ntBASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 AC027682.1-201ENST00000562846 899 ntBASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.55■□□□□ 0.72
CLIP4Q8N3C7 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.54■□□□□ 0.72
CLIP4Q8N3C7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 AL355001.2-201ENST00000620617 1191 ntBASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.53■□□□□ 0.72
CLIP4Q8N3C7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 AF213884.3-201ENST00000563833 479 ntBASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 AL031432.3-201ENST00000607698 485 ntBASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLIP4Q8N3C7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
CLIP4Q8N3C7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLIP4Q8N3C7 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLIP4Q8N3C7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms