Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
LINC00643Q86TS7 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 AC007613.1-201ENST00000572811 2597 ntBASIC13.15□□□□□ -0.3
LINC00643Q86TS7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LINC00643Q86TS7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
LINC00643Q86TS7 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC13.15□□□□□ -0.31
LINC00643Q86TS7 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LINC00643Q86TS7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
LINC00643Q86TS7 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms