Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 AC105265.2-201ENST00000467189 838 ntBASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 AL358852.1-201ENST00000623174 1268 ntBASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC40Q4G0X9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CCDC40Q4G0X9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23■■□□□ 1.27
CCDC40Q4G0X9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23■■□□□ 1.27
CCDC40Q4G0X9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23■■□□□ 1.27
CCDC40Q4G0X9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23■■□□□ 1.27
CCDC40Q4G0X9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CCDC40Q4G0X9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC40Q4G0X9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC23■■□□□ 1.27
CCDC40Q4G0X9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 TPRG1LP1-201ENST00000598702 760 ntBASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC40Q4G0X9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 IRS3P-201ENST00000223076 1006 ntBASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC40Q4G0X9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 MIR638-201ENST00000385237 100 ntBASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC40Q4G0X9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC40Q4G0X9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms