Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX2P48431 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.39■□□□□ 0.53
SOX2P48431 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.39■□□□□ 0.53
SOX2P48431 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.39■□□□□ 0.53
SOX2P48431 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX2P48431 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SOX2P48431 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX2P48431 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX2P48431 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SOX2P48431 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.38■□□□□ 0.53
SOX2P48431 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.38■□□□□ 0.53
SOX2P48431 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SOX2P48431 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.38■□□□□ 0.53
SOX2P48431 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX2P48431 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SOX2P48431 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SOX2P48431 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SOX2P48431 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SOX2P48431 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.37■□□□□ 0.53
SOX2P48431 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SOX2P48431 SERBP1P1-201ENST00000396021 1160 ntBASIC18.37■□□□□ 0.53
SOX2P48431 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.37■□□□□ 0.53
SOX2P48431 AL512631.2-201ENST00000604634 923 ntBASIC18.37■□□□□ 0.53
SOX2P48431 AL035685.1-201ENST00000636663 812 ntBASIC18.37■□□□□ 0.53
SOX2P48431 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SOX2P48431 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SOX2P48431 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX2P48431 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SOX2P48431 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SOX2P48431 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SOX2P48431 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 AP006587.3-201ENST00000525742 1516 ntBASIC18.36■□□□□ 0.53
SOX2P48431 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.36■□□□□ 0.53
SOX2P48431 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.36■□□□□ 0.53
SOX2P48431 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.36■□□□□ 0.53
SOX2P48431 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
SOX2P48431 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.36■□□□□ 0.53
SOX2P48431 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SOX2P48431 SYT6-210ENST00000641643 1587 ntBASIC18.36■□□□□ 0.53
SOX2P48431 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX2P48431 PCDHAC2-203ENST00000615316 3011 ntBASIC18.36■□□□□ 0.53
SOX2P48431 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SOX2P48431 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.35■□□□□ 0.53
SOX2P48431 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX2P48431 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX2P48431 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX2P48431 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
SOX2P48431 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.35■□□□□ 0.53
SOX2P48431 AC006128.1-201ENST00000624704 1661 ntBASIC18.35■□□□□ 0.53
SOX2P48431 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SOX2P48431 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX2P48431 AL391422.3-201ENST00000603791 2761 ntBASIC18.35■□□□□ 0.53
SOX2P48431 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.35■□□□□ 0.53
SOX2P48431 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX2P48431 GUSBP5-201ENST00000418136 578 ntBASIC18.35■□□□□ 0.53
SOX2P48431 SLC47A1P1-202ENST00000449666 945 ntBASIC18.35■□□□□ 0.53
SOX2P48431 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.35■□□□□ 0.53
SOX2P48431 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SOX2P48431 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX2P48431 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms