Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH2P43246 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH2P43246 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH2P43246 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.24■□□□□ 0.99
MSH2P43246 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH2P43246 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
MSH2P43246 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
MSH2P43246 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
MSH2P43246 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH2P43246 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.23■□□□□ 0.99
MSH2P43246 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.23■□□□□ 0.99
MSH2P43246 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.23■□□□□ 0.99
MSH2P43246 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
MSH2P43246 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
MSH2P43246 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH2P43246 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH2P43246 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH2P43246 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.22■□□□□ 0.99
MSH2P43246 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH2P43246 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
MSH2P43246 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.22■□□□□ 0.99
MSH2P43246 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH2P43246 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.22■□□□□ 0.99
MSH2P43246 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH2P43246 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH2P43246 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
MSH2P43246 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.21■□□□□ 0.99
MSH2P43246 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH2P43246 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
MSH2P43246 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
MSH2P43246 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.21■□□□□ 0.99
MSH2P43246 AP005435.1-201ENST00000529293 1178 ntBASIC21.21■□□□□ 0.99
MSH2P43246 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH2P43246 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.21■□□□□ 0.99
MSH2P43246 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.21■□□□□ 0.99
MSH2P43246 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.2■□□□□ 0.99
MSH2P43246 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH2P43246 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 AP006587.3-201ENST00000525742 1516 ntBASIC21.2■□□□□ 0.98
MSH2P43246 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH2P43246 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH2P43246 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 AC131212.1-201ENST00000613771 668 ntBASIC21.2■□□□□ 0.98
MSH2P43246 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH2P43246 AC006128.1-201ENST00000624704 1661 ntBASIC21.2■□□□□ 0.98
MSH2P43246 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH2P43246 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
MSH2P43246 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH2P43246 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH2P43246 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms