Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.68■□□□□ 0.74
SOX3P41225 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.67■□□□□ 0.74
SOX3P41225 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SOX3P41225 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX3P41225 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SOX3P41225 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX3P41225 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.67■□□□□ 0.74
SOX3P41225 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX3P41225 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.67■□□□□ 0.74
SOX3P41225 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.67■□□□□ 0.74
SOX3P41225 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.67■□□□□ 0.74
SOX3P41225 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SOX3P41225 AC137761.2-201ENST00000561729 223 ntBASIC19.67■□□□□ 0.74
SOX3P41225 AC145350.3-201ENST00000569033 163 ntBASIC19.67■□□□□ 0.74
SOX3P41225 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.67■□□□□ 0.74
SOX3P41225 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.67■□□□□ 0.74
SOX3P41225 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX3P41225 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.66■□□□□ 0.74
SOX3P41225 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SOX3P41225 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.66■□□□□ 0.74
SOX3P41225 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.66■□□□□ 0.74
SOX3P41225 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.66■□□□□ 0.74
SOX3P41225 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.66■□□□□ 0.74
SOX3P41225 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.66■□□□□ 0.74
SOX3P41225 AC104187.1-201ENST00000607510 612 ntBASIC19.66■□□□□ 0.74
SOX3P41225 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SOX3P41225 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SOX3P41225 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SOX3P41225 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX3P41225 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SOX3P41225 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.65■□□□□ 0.74
SOX3P41225 AC004911.1-201ENST00000416316 871 ntBASIC19.65■□□□□ 0.74
SOX3P41225 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SOX3P41225 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SOX3P41225 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SOX3P41225 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.65■□□□□ 0.74
SOX3P41225 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SOX3P41225 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SOX3P41225 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
SOX3P41225 AC016769.1-201ENST00000409132 1010 ntBASIC19.64■□□□□ 0.73
SOX3P41225 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.64■□□□□ 0.73
SOX3P41225 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX3P41225 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
SOX3P41225 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX3P41225 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX3P41225 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.64■□□□□ 0.73
SOX3P41225 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX3P41225 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX3P41225 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.64■□□□□ 0.73
SOX3P41225 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SOX3P41225 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX3P41225 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SOX3P41225 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SOX3P41225 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SOX3P41225 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.63■□□□□ 0.73
SOX3P41225 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.63■□□□□ 0.73
SOX3P41225 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
SOX3P41225 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.63■□□□□ 0.73
SOX3P41225 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.63■□□□□ 0.73
SOX3P41225 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.63■□□□□ 0.73
SOX3P41225 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX3P41225 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.62■□□□□ 0.73
SOX3P41225 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.62■□□□□ 0.73
SOX3P41225 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SOX3P41225 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.62■□□□□ 0.73
SOX3P41225 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.62■□□□□ 0.73
SOX3P41225 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.62■□□□□ 0.73
SOX3P41225 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.62■□□□□ 0.73
SOX3P41225 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms