Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.31■□□□□ 0.84
COL5A1P20908 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
COL5A1P20908 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL5A1P20908 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL5A1P20908 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.3■□□□□ 0.84
COL5A1P20908 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.3■□□□□ 0.84
COL5A1P20908 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.3■□□□□ 0.84
COL5A1P20908 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
COL5A1P20908 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
COL5A1P20908 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.3■□□□□ 0.84
COL5A1P20908 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.3■□□□□ 0.84
COL5A1P20908 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL5A1P20908 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.3■□□□□ 0.84
COL5A1P20908 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.3■□□□□ 0.84
COL5A1P20908 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.3■□□□□ 0.84
COL5A1P20908 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A1P20908 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.3■□□□□ 0.84
COL5A1P20908 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.3■□□□□ 0.84
COL5A1P20908 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.3■□□□□ 0.84
COL5A1P20908 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A1P20908 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL5A1P20908 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.29■□□□□ 0.84
COL5A1P20908 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A1P20908 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A1P20908 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.29■□□□□ 0.84
COL5A1P20908 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL5A1P20908 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A1P20908 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A1P20908 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A1P20908 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.29■□□□□ 0.84
COL5A1P20908 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A1P20908 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.29■□□□□ 0.84
COL5A1P20908 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.29■□□□□ 0.84
COL5A1P20908 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.29■□□□□ 0.84
COL5A1P20908 PNMA6B-201ENST00000538162 1200 ntBASIC20.29■□□□□ 0.84
COL5A1P20908 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.29■□□□□ 0.84
COL5A1P20908 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.29■□□□□ 0.84
COL5A1P20908 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.29■□□□□ 0.84
COL5A1P20908 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A1P20908 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A1P20908 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
COL5A1P20908 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A1P20908 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A1P20908 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A1P20908 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A1P20908 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A1P20908 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A1P20908 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A1P20908 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A1P20908 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A1P20908 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COL5A1P20908 C9orf163-202ENST00000624034 2573 ntBASIC20.27■□□□□ 0.84
COL5A1P20908 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.27■□□□□ 0.84
COL5A1P20908 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A1P20908 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.27■□□□□ 0.84
COL5A1P20908 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.27■□□□□ 0.84
COL5A1P20908 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.27■□□□□ 0.84
COL5A1P20908 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.27■□□□□ 0.84
COL5A1P20908 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A1P20908 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A1P20908 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A1P20908 HLA-B-256ENST00000639848 1089 ntBASIC20.27■□□□□ 0.84
COL5A1P20908 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.83
COL5A1P20908 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL5A1P20908 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A1P20908 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A1P20908 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A1P20908 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A1P20908 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A1P20908 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.26■□□□□ 0.83
COL5A1P20908 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.26■□□□□ 0.83
COL5A1P20908 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.26■□□□□ 0.83
COL5A1P20908 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A1P20908 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A1P20908 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A1P20908 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 FAM197Y4-202ENST00000622692 608 ntBASIC20.25■□□□□ 0.83
COL5A1P20908 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.25■□□□□ 0.83
COL5A1P20908 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
COL5A1P20908 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A1P20908 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms