Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
XRCC1P18887 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC1P18887 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.85■□□□□ 0.93
XRCC1P18887 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
XRCC1P18887 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
XRCC1P18887 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
XRCC1P18887 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.85■□□□□ 0.93
XRCC1P18887 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.85■□□□□ 0.93
XRCC1P18887 AC006015.1-201ENST00000429970 570 ntBASIC20.85■□□□□ 0.93
XRCC1P18887 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.85■□□□□ 0.93
XRCC1P18887 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.85■□□□□ 0.93
XRCC1P18887 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.85■□□□□ 0.93
XRCC1P18887 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.85■□□□□ 0.93
XRCC1P18887 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
XRCC1P18887 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
XRCC1P18887 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
XRCC1P18887 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
XRCC1P18887 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
XRCC1P18887 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC1P18887 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC1P18887 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC1P18887 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC1P18887 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.84■□□□□ 0.93
XRCC1P18887 AC244015.2-201ENST00000616358 1861 ntBASIC20.84■□□□□ 0.93
XRCC1P18887 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC1P18887 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC1P18887 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.84■□□□□ 0.93
XRCC1P18887 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.84■□□□□ 0.93
XRCC1P18887 AC004911.1-201ENST00000416316 871 ntBASIC20.84■□□□□ 0.93
XRCC1P18887 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.84■□□□□ 0.93
XRCC1P18887 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
XRCC1P18887 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.84■□□□□ 0.93
XRCC1P18887 AC137761.2-201ENST00000561729 223 ntBASIC20.84■□□□□ 0.93
XRCC1P18887 AC145350.3-201ENST00000569033 163 ntBASIC20.84■□□□□ 0.93
XRCC1P18887 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC1P18887 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC1P18887 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC1P18887 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.83■□□□□ 0.93
XRCC1P18887 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
XRCC1P18887 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC1P18887 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC1P18887 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC1P18887 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
XRCC1P18887 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC1P18887 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC1P18887 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC1P18887 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.83■□□□□ 0.93
XRCC1P18887 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.83■□□□□ 0.93
XRCC1P18887 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.83■□□□□ 0.93
XRCC1P18887 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.83■□□□□ 0.93
XRCC1P18887 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.83■□□□□ 0.93
XRCC1P18887 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.83■□□□□ 0.93
XRCC1P18887 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC1P18887 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
XRCC1P18887 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
XRCC1P18887 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.83■□□□□ 0.92
XRCC1P18887 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.83■□□□□ 0.92
XRCC1P18887 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
XRCC1P18887 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.83■□□□□ 0.92
XRCC1P18887 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.83■□□□□ 0.92
XRCC1P18887 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 AC016769.1-201ENST00000409132 1010 ntBASIC20.82■□□□□ 0.92
XRCC1P18887 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.82■□□□□ 0.92
XRCC1P18887 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.82■□□□□ 0.92
XRCC1P18887 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.82■□□□□ 0.92
XRCC1P18887 RARRES2P11-201ENST00000635158 484 ntBASIC20.82■□□□□ 0.92
XRCC1P18887 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.82■□□□□ 0.92
XRCC1P18887 AP006587.3-201ENST00000525742 1516 ntBASIC20.82■□□□□ 0.92
XRCC1P18887 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
XRCC1P18887 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 AL157384.1-201ENST00000445995 2473 ntBASIC20.81■□□□□ 0.92
XRCC1P18887 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.81■□□□□ 0.92
XRCC1P18887 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
XRCC1P18887 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
XRCC1P18887 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
XRCC1P18887 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC1P18887 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC1P18887 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC1P18887 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.8■□□□□ 0.92
XRCC1P18887 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.8■□□□□ 0.92
XRCC1P18887 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.8■□□□□ 0.92
XRCC1P18887 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC1P18887 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms