Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DPB1P04440 AL138724.1-201ENST00000606771 1088 ntBASIC18.79■□□□□ 0.6
HLA-DPB1P04440 AL136162.1-201ENST00000607711 1078 ntBASIC18.79■□□□□ 0.6
HLA-DPB1P04440 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.79■□□□□ 0.6
HLA-DPB1P04440 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.79■□□□□ 0.6
HLA-DPB1P04440 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.79■□□□□ 0.6
HLA-DPB1P04440 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HLA-DPB1P04440 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.79■□□□□ 0.6
HLA-DPB1P04440 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 AC024257.2-201ENST00000549699 147 ntBASIC18.78■□□□□ 0.6
HLA-DPB1P04440 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
HLA-DPB1P04440 GABARAPL3-202ENST00000624044 1851 ntBASIC18.77■□□□□ 0.6
HLA-DPB1P04440 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 AC011298.3-201ENST00000615796 283 ntBASIC18.77■□□□□ 0.6
HLA-DPB1P04440 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 AC007952.6-201ENST00000573168 2673 ntBASIC18.77■□□□□ 0.6
HLA-DPB1P04440 AC003957.1-201ENST00000625108 2673 ntBASIC18.77■□□□□ 0.6
HLA-DPB1P04440 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DPB1P04440 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.77■□□□□ 0.59
HLA-DPB1P04440 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 AC135279.3-201ENST00000610945 1311 ntBASIC18.76■□□□□ 0.59
HLA-DPB1P04440 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 PBX2P1-201ENST00000493219 1291 ntBASIC18.76■□□□□ 0.59
HLA-DPB1P04440 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 AC136469.2-201ENST00000623944 1028 ntBASIC18.76■□□□□ 0.59
HLA-DPB1P04440 AL031602.1-201ENST00000633169 911 ntBASIC18.76■□□□□ 0.59
HLA-DPB1P04440 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DPB1P04440 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 MIR4767-201ENST00000582827 78 ntBASIC18.75■□□□□ 0.59
HLA-DPB1P04440 AC110285.6-201ENST00000617652 491 ntBASIC18.75■□□□□ 0.59
HLA-DPB1P04440 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DPB1P04440 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 AC010525.1-201ENST00000585559 441 ntBASIC18.74■□□□□ 0.59
HLA-DPB1P04440 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DPB1P04440 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms