Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SNX3O60493 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.67■□□□□ 0.9
SNX3O60493 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SNX3O60493 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SNX3O60493 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.67■□□□□ 0.9
SNX3O60493 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SNX3O60493 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
SNX3O60493 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SNX3O60493 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX3O60493 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.66■□□□□ 0.9
SNX3O60493 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SNX3O60493 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.66■□□□□ 0.9
SNX3O60493 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SNX3O60493 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.66■□□□□ 0.9
SNX3O60493 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.66■□□□□ 0.9
SNX3O60493 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.66■□□□□ 0.9
SNX3O60493 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.66■□□□□ 0.9
SNX3O60493 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SNX3O60493 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SNX3O60493 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX3O60493 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 AC116562.4-201ENST00000641316 2276 ntBASIC20.65■□□□□ 0.9
SNX3O60493 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.65■□□□□ 0.9
SNX3O60493 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 AC121338.2-201ENST00000622535 1744 ntBASIC20.65■□□□□ 0.9
SNX3O60493 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
SNX3O60493 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.65■□□□□ 0.9
SNX3O60493 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX3O60493 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SNX3O60493 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SNX3O60493 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.64■□□□□ 0.89
SNX3O60493 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.64■□□□□ 0.89
SNX3O60493 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 AC074183.2-201ENST00000623112 922 ntBASIC20.64■□□□□ 0.89
SNX3O60493 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX3O60493 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.64■□□□□ 0.89
SNX3O60493 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SNX3O60493 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.63■□□□□ 0.89
SNX3O60493 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.63■□□□□ 0.89
SNX3O60493 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.63■□□□□ 0.89
SNX3O60493 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.63■□□□□ 0.89
SNX3O60493 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.63■□□□□ 0.89
SNX3O60493 BHLHE23-202ENST00000612929 1109 ntBASIC20.63■□□□□ 0.89
SNX3O60493 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.63■□□□□ 0.89
SNX3O60493 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SNX3O60493 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SNX3O60493 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms