Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
XRCC3O43542 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
XRCC3O43542 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
XRCC3O43542 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
XRCC3O43542 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
XRCC3O43542 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
XRCC3O43542 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
XRCC3O43542 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
XRCC3O43542 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
XRCC3O43542 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC17.95■□□□□ 0.46
XRCC3O43542 AC020907.5-201ENST00000624372 1936 ntBASIC17.95■□□□□ 0.46
XRCC3O43542 AP004607.7-201ENST00000527152 1677 ntBASIC17.95■□□□□ 0.46
XRCC3O43542 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
XRCC3O43542 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
XRCC3O43542 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
XRCC3O43542 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.95■□□□□ 0.46
XRCC3O43542 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 KRT125P-201ENST00000546827 989 ntBASIC17.94■□□□□ 0.46
XRCC3O43542 AC010997.5-201ENST00000609182 354 ntBASIC17.94■□□□□ 0.46
XRCC3O43542 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.94■□□□□ 0.46
XRCC3O43542 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.94■□□□□ 0.46
XRCC3O43542 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
XRCC3O43542 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.94■□□□□ 0.46
XRCC3O43542 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.94■□□□□ 0.46
XRCC3O43542 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
XRCC3O43542 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
XRCC3O43542 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
XRCC3O43542 AC121338.2-201ENST00000622535 1744 ntBASIC17.93■□□□□ 0.46
XRCC3O43542 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
XRCC3O43542 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.93■□□□□ 0.46
XRCC3O43542 OR2I1P-207ENST00000453522 948 ntBASIC17.93■□□□□ 0.46
XRCC3O43542 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC17.93■□□□□ 0.46
XRCC3O43542 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
XRCC3O43542 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
XRCC3O43542 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.92■□□□□ 0.46
XRCC3O43542 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC17.92■□□□□ 0.46
XRCC3O43542 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC17.92■□□□□ 0.46
XRCC3O43542 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
XRCC3O43542 PRTG-204ENST00000561292 833 ntTSL 3 BASIC17.92■□□□□ 0.46
XRCC3O43542 AC012354.3-201ENST00000623734 483 ntBASIC17.92■□□□□ 0.46
XRCC3O43542 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 AC007225.1-201ENST00000566331 1836 ntBASIC17.92■□□□□ 0.46
XRCC3O43542 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.92■□□□□ 0.46
XRCC3O43542 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
XRCC3O43542 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
XRCC3O43542 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
XRCC3O43542 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
XRCC3O43542 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
XRCC3O43542 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
XRCC3O43542 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.91■□□□□ 0.46
XRCC3O43542 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
XRCC3O43542 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
XRCC3O43542 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
XRCC3O43542 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
XRCC3O43542 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
XRCC3O43542 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
XRCC3O43542 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
XRCC3O43542 AC006455.2-201ENST00000429931 906 ntBASIC17.91■□□□□ 0.46
XRCC3O43542 AL033527.3-201ENST00000566366 1196 ntBASIC17.91■□□□□ 0.46
XRCC3O43542 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
XRCC3O43542 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
XRCC3O43542 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
XRCC3O43542 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
XRCC3O43542 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
XRCC3O43542 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
XRCC3O43542 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC3O43542 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC3O43542 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.9■□□□□ 0.46
XRCC3O43542 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC3O43542 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
XRCC3O43542 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.9■□□□□ 0.46
XRCC3O43542 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.9■□□□□ 0.46
XRCC3O43542 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC3O43542 LSM4-201ENST00000252816 986 ntTSL 2 BASIC17.9■□□□□ 0.46
XRCC3O43542 RNF146-205ENST00000477776 762 ntTSL 3 BASIC17.9■□□□□ 0.46
XRCC3O43542 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.9■□□□□ 0.46
XRCC3O43542 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.9■□□□□ 0.46
XRCC3O43542 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.9■□□□□ 0.46
XRCC3O43542 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC3O43542 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC3O43542 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.9■□□□□ 0.46
XRCC3O43542 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.9■□□□□ 0.46
XRCC3O43542 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
XRCC3O43542 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms