Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
PCDH9Q9HC56 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
PCDH9Q9HC56 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC27.57■■■□□ 2
PCDH9Q9HC56 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
PCDH9Q9HC56 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
PCDH9Q9HC56 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC27.56■■■□□ 2
PCDH9Q9HC56 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
PCDH9Q9HC56 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
PCDH9Q9HC56 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.54■■■□□ 2
PCDH9Q9HC56 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PCDH9Q9HC56 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC27.53■■■□□ 2
PCDH9Q9HC56 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
PCDH9Q9HC56 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
PCDH9Q9HC56 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.52■■■□□ 2
PCDH9Q9HC56 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
PCDH9Q9HC56 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC27.51■■■□□ 2
PCDH9Q9HC56 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
PCDH9Q9HC56 AC097358.2-201ENST00000607541 1159 ntBASIC27.5■■□□□ 1.99
PCDH9Q9HC56 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
PCDH9Q9HC56 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
PCDH9Q9HC56 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
PCDH9Q9HC56 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
PCDH9Q9HC56 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
PCDH9Q9HC56 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
PCDH9Q9HC56 AC136428.2-201ENST00000563187 214 ntBASIC27.48■■□□□ 1.99
PCDH9Q9HC56 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC27.48■■□□□ 1.99
PCDH9Q9HC56 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
PCDH9Q9HC56 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC27.47■■□□□ 1.99
PCDH9Q9HC56 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.46■■□□□ 1.99
PCDH9Q9HC56 AC139426.1-201ENST00000568218 2529 ntBASIC27.46■■□□□ 1.99
PCDH9Q9HC56 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.98
PCDH9Q9HC56 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC27.45■■□□□ 1.98
PCDH9Q9HC56 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.44■■□□□ 1.98
PCDH9Q9HC56 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC27.44■■□□□ 1.98
PCDH9Q9HC56 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
PCDH9Q9HC56 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
PCDH9Q9HC56 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
PCDH9Q9HC56 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC27.43■■□□□ 1.98
PCDH9Q9HC56 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PCDH9Q9HC56 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PCDH9Q9HC56 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PCDH9Q9HC56 SHF-206ENST00000560471 2499 ntTSL 5 BASIC27.42■■□□□ 1.98
PCDH9Q9HC56 AL135925.1-201ENST00000605920 1701 ntBASIC27.41■■□□□ 1.98
PCDH9Q9HC56 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC27.4■■□□□ 1.98
PCDH9Q9HC56 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
PCDH9Q9HC56 WASH5P-204ENST00000632292 975 ntBASIC27.39■■□□□ 1.98
PCDH9Q9HC56 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
PCDH9Q9HC56 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
PCDH9Q9HC56 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC27.37■■□□□ 1.97
PCDH9Q9HC56 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
PCDH9Q9HC56 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
PCDH9Q9HC56 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
PCDH9Q9HC56 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
PCDH9Q9HC56 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
PCDH9Q9HC56 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
PCDH9Q9HC56 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.34■■□□□ 1.97
PCDH9Q9HC56 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
PCDH9Q9HC56 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC27.33■■□□□ 1.97
PCDH9Q9HC56 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
PCDH9Q9HC56 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC27.32■■□□□ 1.96
PCDH9Q9HC56 CAHM-201ENST00000604200 896 ntBASIC27.32■■□□□ 1.96
PCDH9Q9HC56 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
PCDH9Q9HC56 AL391121.1-201ENST00000607967 1349 ntBASIC27.3■■□□□ 1.96
PCDH9Q9HC56 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCDH9Q9HC56 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCDH9Q9HC56 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
PCDH9Q9HC56 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC27.29■■□□□ 1.96
PCDH9Q9HC56 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
PCDH9Q9HC56 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC27.28■■□□□ 1.96
PCDH9Q9HC56 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
PCDH9Q9HC56 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PCDH9Q9HC56 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PCDH9Q9HC56 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
PCDH9Q9HC56 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
PCDH9Q9HC56 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
PCDH9Q9HC56 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
PCDH9Q9HC56 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.25■■□□□ 1.95
PCDH9Q9HC56 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PCDH9Q9HC56 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PCDH9Q9HC56 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PCDH9Q9HC56 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC27.23■■□□□ 1.95
PCDH9Q9HC56 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27.23■■□□□ 1.95
PCDH9Q9HC56 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
PCDH9Q9HC56 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
PCDH9Q9HC56 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC27.23■■□□□ 1.95
PCDH9Q9HC56 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
PCDH9Q9HC56 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PCDH9Q9HC56 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PCDH9Q9HC56 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.22■■□□□ 1.95
PCDH9Q9HC56 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PCDH9Q9HC56 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC27.21■■□□□ 1.95
PCDH9Q9HC56 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC27.21■■□□□ 1.95
PCDH9Q9HC56 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.95
PCDH9Q9HC56 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.94
PCDH9Q9HC56 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.2■■□□□ 1.94
PCDH9Q9HC56 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC27.19■■□□□ 1.94
PCDH9Q9HC56 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.19■■□□□ 1.94
PCDH9Q9HC56 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PCDH9Q9HC56 SUZ12P1-203ENST00000578195 985 ntBASIC27.17■■□□□ 1.94
PCDH9Q9HC56 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms