Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
LRCH3Q96II8 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC29.6■■■□□ 2.33
LRCH3Q96II8 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
LRCH3Q96II8 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
LRCH3Q96II8 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
LRCH3Q96II8 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
LRCH3Q96II8 MIR6090-201ENST00000622481 60 ntBASIC29.58■■■□□ 2.33
LRCH3Q96II8 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.58■■■□□ 2.33
LRCH3Q96II8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
LRCH3Q96II8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.57■■■□□ 2.32
LRCH3Q96II8 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
LRCH3Q96II8 WASH5P-204ENST00000632292 975 ntBASIC29.55■■■□□ 2.32
LRCH3Q96II8 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
LRCH3Q96II8 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC29.54■■■□□ 2.32
LRCH3Q96II8 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
LRCH3Q96II8 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
LRCH3Q96II8 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
LRCH3Q96II8 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC29.53■■■□□ 2.32
LRCH3Q96II8 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC29.53■■■□□ 2.32
LRCH3Q96II8 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.53■■■□□ 2.32
LRCH3Q96II8 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
LRCH3Q96II8 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
LRCH3Q96II8 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.5■■■□□ 2.31
LRCH3Q96II8 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
LRCH3Q96II8 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
LRCH3Q96II8 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.48■■■□□ 2.31
LRCH3Q96II8 AC108673.1-201ENST00000510422 1159 ntBASIC29.48■■■□□ 2.31
LRCH3Q96II8 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.48■■■□□ 2.31
LRCH3Q96II8 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.48■■■□□ 2.31
LRCH3Q96II8 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
LRCH3Q96II8 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
LRCH3Q96II8 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
LRCH3Q96II8 AC012354.3-201ENST00000623734 483 ntBASIC29.45■■■□□ 2.31
LRCH3Q96II8 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.44■■■□□ 2.3
LRCH3Q96II8 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.44■■■□□ 2.3
LRCH3Q96II8 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
LRCH3Q96II8 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
LRCH3Q96II8 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC29.43■■■□□ 2.3
LRCH3Q96II8 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
LRCH3Q96II8 GPX1-201ENST00000419349 1106 ntBASIC29.42■■■□□ 2.3
LRCH3Q96II8 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
LRCH3Q96II8 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
LRCH3Q96II8 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.4■■■□□ 2.3
LRCH3Q96II8 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
LRCH3Q96II8 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC29.39■■■□□ 2.3
LRCH3Q96II8 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
LRCH3Q96II8 RNF126P1-201ENST00000567452 1320 ntBASIC29.38■■■□□ 2.29
LRCH3Q96II8 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
LRCH3Q96II8 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC29.37■■■□□ 2.29
LRCH3Q96II8 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC29.36■■■□□ 2.29
LRCH3Q96II8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 AC018358.1-201ENST00000631079 1402 ntBASIC29.36■■■□□ 2.29
LRCH3Q96II8 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
LRCH3Q96II8 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
LRCH3Q96II8 NTF6A-201ENST00000591175 560 ntBASIC29.35■■■□□ 2.29
LRCH3Q96II8 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.35■■■□□ 2.29
LRCH3Q96II8 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
LRCH3Q96II8 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.32■■■□□ 2.28
LRCH3Q96II8 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.32■■■□□ 2.28
LRCH3Q96II8 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L13-201ENST00000554103 1267 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L15-201ENST00000611059 1267 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L23-201ENST00000615195 1269 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L24-201ENST00000617576 1269 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L22-201ENST00000618238 1269 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L20-201ENST00000619712 1269 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L21-201ENST00000622058 1269 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L10-201ENST00000622460 1267 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 DUX4L25-201ENST00000624915 1269 ntBASIC29.31■■■□□ 2.28
LRCH3Q96II8 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC29.31■■■□□ 2.28
LRCH3Q96II8 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
LRCH3Q96II8 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC29.3■■■□□ 2.28
LRCH3Q96II8 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC29.29■■■□□ 2.28
LRCH3Q96II8 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.29■■■□□ 2.28
LRCH3Q96II8 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
LRCH3Q96II8 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
LRCH3Q96II8 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC29.26■■■□□ 2.27
LRCH3Q96II8 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
LRCH3Q96II8 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
LRCH3Q96II8 AL033527.3-201ENST00000566366 1196 ntBASIC29.26■■■□□ 2.27
LRCH3Q96II8 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
LRCH3Q96II8 AC008813.1-201ENST00000536597 885 ntBASIC29.24■■■□□ 2.27
LRCH3Q96II8 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC29.23■■■□□ 2.27
LRCH3Q96II8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
LRCH3Q96II8 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
LRCH3Q96II8 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC29.21■■■□□ 2.27
LRCH3Q96II8 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
LRCH3Q96II8 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
LRCH3Q96II8 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
LRCH3Q96II8 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC29.21■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms