Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 HSD17B1P1-201ENST00000590052 955 ntBASIC27.88■■■□□ 2.05
SLC44A3Q8N4M1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.88■■■□□ 2.05
SLC44A3Q8N4M1 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
SLC44A3Q8N4M1 DUX4L11-201ENST00000611504 1267 ntBASIC27.87■■■□□ 2.05
SLC44A3Q8N4M1 DUX4L12-201ENST00000614593 1267 ntBASIC27.87■■■□□ 2.05
SLC44A3Q8N4M1 DUX4L14-201ENST00000621227 1267 ntBASIC27.87■■■□□ 2.05
SLC44A3Q8N4M1 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SLC44A3Q8N4M1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC27.86■■■□□ 2.05
SLC44A3Q8N4M1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC27.86■■■□□ 2.05
SLC44A3Q8N4M1 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SLC44A3Q8N4M1 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
SLC44A3Q8N4M1 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC27.86■■■□□ 2.05
SLC44A3Q8N4M1 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SLC44A3Q8N4M1 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC27.85■■■□□ 2.05
SLC44A3Q8N4M1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
SLC44A3Q8N4M1 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SLC44A3Q8N4M1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.84■■■□□ 2.05
SLC44A3Q8N4M1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.84■■■□□ 2.05
SLC44A3Q8N4M1 LINC01971-201ENST00000617888 1048 ntBASIC27.84■■■□□ 2.05
SLC44A3Q8N4M1 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
SLC44A3Q8N4M1 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.83■■■□□ 2.05
SLC44A3Q8N4M1 CR559946.2-201ENST00000623684 991 ntBASIC27.83■■■□□ 2.05
SLC44A3Q8N4M1 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SLC44A3Q8N4M1 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC27.82■■■□□ 2.04
SLC44A3Q8N4M1 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
SLC44A3Q8N4M1 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SLC44A3Q8N4M1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SLC44A3Q8N4M1 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SLC44A3Q8N4M1 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC27.8■■■□□ 2.04
SLC44A3Q8N4M1 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SLC44A3Q8N4M1 BRD4-212ENST00000630599 726 ntTSL 2 BASIC27.79■■■□□ 2.04
SLC44A3Q8N4M1 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SLC44A3Q8N4M1 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
SLC44A3Q8N4M1 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC27.77■■■□□ 2.04
SLC44A3Q8N4M1 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC27.77■■■□□ 2.04
SLC44A3Q8N4M1 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC27.75■■■□□ 2.03
SLC44A3Q8N4M1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.75■■■□□ 2.03
SLC44A3Q8N4M1 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SLC44A3Q8N4M1 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
SLC44A3Q8N4M1 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SLC44A3Q8N4M1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC27.74■■■□□ 2.03
SLC44A3Q8N4M1 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SLC44A3Q8N4M1 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC27.74■■■□□ 2.03
SLC44A3Q8N4M1 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SLC44A3Q8N4M1 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SLC44A3Q8N4M1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SLC44A3Q8N4M1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC27.73■■■□□ 2.03
SLC44A3Q8N4M1 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC27.72■■■□□ 2.03
SLC44A3Q8N4M1 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SLC44A3Q8N4M1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SLC44A3Q8N4M1 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
SLC44A3Q8N4M1 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.71■■■□□ 2.03
SLC44A3Q8N4M1 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
SLC44A3Q8N4M1 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC27.7■■■□□ 2.02
SLC44A3Q8N4M1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SLC44A3Q8N4M1 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SLC44A3Q8N4M1 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SLC44A3Q8N4M1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
SLC44A3Q8N4M1 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SLC44A3Q8N4M1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SLC44A3Q8N4M1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SLC44A3Q8N4M1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC27.65■■■□□ 2.02
SLC44A3Q8N4M1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC27.64■■■□□ 2.01
SLC44A3Q8N4M1 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC27.63■■■□□ 2.01
SLC44A3Q8N4M1 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SLC44A3Q8N4M1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.61■■■□□ 2.01
SLC44A3Q8N4M1 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
SLC44A3Q8N4M1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SLC44A3Q8N4M1 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SLC44A3Q8N4M1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SLC44A3Q8N4M1 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
SLC44A3Q8N4M1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.59■■■□□ 2.01
SLC44A3Q8N4M1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SLC44A3Q8N4M1 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
SLC44A3Q8N4M1 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SLC44A3Q8N4M1 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC27.57■■■□□ 2
SLC44A3Q8N4M1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC27.57■■■□□ 2
SLC44A3Q8N4M1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC27.57■■■□□ 2
SLC44A3Q8N4M1 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC27.57■■■□□ 2
SLC44A3Q8N4M1 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC27.57■■■□□ 2
SLC44A3Q8N4M1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SLC44A3Q8N4M1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC27.55■■■□□ 2
SLC44A3Q8N4M1 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC27.55■■■□□ 2
SLC44A3Q8N4M1 DUX4L13-201ENST00000554103 1267 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 DUX4L15-201ENST00000611059 1267 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 DUX4L23-201ENST00000615195 1269 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 DUX4L24-201ENST00000617576 1269 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 DUX4L22-201ENST00000618238 1269 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 DUX4L20-201ENST00000619712 1269 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 DUX4L21-201ENST00000622058 1269 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 DUX4L10-201ENST00000622460 1267 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 DUX4L25-201ENST00000624915 1269 ntBASIC27.54■■■□□ 2
SLC44A3Q8N4M1 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SLC44A3Q8N4M1 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC27.52■■■□□ 2
SLC44A3Q8N4M1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC27.52■■■□□ 2
SLC44A3Q8N4M1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC27.51■■■□□ 2
SLC44A3Q8N4M1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
SLC44A3Q8N4M1 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SLC44A3Q8N4M1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SLC44A3Q8N4M1 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC27.5■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms